Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01776

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01774 and MPMX19_01775 are separated by 184 nucleotidesMPMX19_01775 and MPMX19_01776 are separated by 36 nucleotidesMPMX19_01776 and MPMX19_01777 are separated by 329 nucleotides MPMX19_01774: MPMX19_01774 - Ketol-acid reductoisomerase (NADP(+)), at 1,861,131 to 1,862,150 _01774 MPMX19_01775: MPMX19_01775 - Acetolactate synthase isozyme 3 small subunit, at 1,862,335 to 1,862,841 _01775 MPMX19_01776: MPMX19_01776 - Acetolactate synthase isozyme 3 large subunit, at 1,862,878 to 1,864,641 _01776 MPMX19_01777: MPMX19_01777 - 2-aminoadipate transaminase, at 1,864,971 to 1,866,182 _01777 Position (kb) 1862 1863 1864 1865Strain fitness (log2 ratio) -2 -1 0 1 2at 1862.336 kb on + strandat 1862.337 kb on - strandat 1862.337 kb on - strandat 1862.337 kb on - strandat 1864.722 kb on - strandat 1864.722 kb on - strandat 1864.722 kb on - strandat 1864.776 kb on - strandat 1864.776 kb on - strandat 1864.776 kb on - strandat 1864.776 kb on - strandat 1865.227 kb on + strand, within MPMX19_01777at 1865.228 kb on - strand, within MPMX19_01777at 1865.228 kb on - strand, within MPMX19_01777at 1865.270 kb on - strand, within MPMX19_01777at 1865.270 kb on - strand, within MPMX19_01777at 1865.270 kb on - strand, within MPMX19_01777at 1865.270 kb on - strand, within MPMX19_01777at 1865.540 kb on - strand, within MPMX19_01777at 1865.554 kb on + strand, within MPMX19_01777at 1865.555 kb on - strand, within MPMX19_01777

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,862,336 + -0.9
1,862,337 - -2.0
1,862,337 - +0.6
1,862,337 - -2.2
1,864,722 - +0.6
1,864,722 - -1.6
1,864,722 - -1.9
1,864,776 - -0.8
1,864,776 - -1.9
1,864,776 - -2.1
1,864,776 - -2.6
1,865,227 + MPMX19_01777 0.21 +2.4
1,865,228 - MPMX19_01777 0.21 +2.4
1,865,228 - MPMX19_01777 0.21 +0.4
1,865,270 - MPMX19_01777 0.25 +1.4
1,865,270 - MPMX19_01777 0.25 +0.1
1,865,270 - MPMX19_01777 0.25 -0.2
1,865,270 - MPMX19_01777 0.25 +1.4
1,865,540 - MPMX19_01777 0.47 +0.8
1,865,554 + MPMX19_01777 0.48 +0.4
1,865,555 - MPMX19_01777 0.48 -0.2

Or see this region's nucleotide sequence