Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01561

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01560 and MPMX19_01561 are separated by 191 nucleotidesMPMX19_01561 and MPMX19_01562 are separated by 169 nucleotides MPMX19_01560: MPMX19_01560 - 3'-5' exonuclease DinG, at 1,638,462 to 1,639,358 _01560 MPMX19_01561: MPMX19_01561 - DNA-invertase hin, at 1,639,550 to 1,640,107 _01561 MPMX19_01562: MPMX19_01562 - hypothetical protein, at 1,640,277 to 1,640,828 _01562 Position (kb) 1639 1640 1641Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1638.701 kb on - strand, within MPMX19_01560at 1638.704 kb on - strand, within MPMX19_01560at 1638.789 kb on - strand, within MPMX19_01560at 1639.048 kb on + strand, within MPMX19_01560at 1639.064 kb on + strand, within MPMX19_01560at 1639.064 kb on + strand, within MPMX19_01560at 1639.065 kb on - strand, within MPMX19_01560at 1639.273 kb on - strandat 1639.317 kb on + strandat 1639.337 kb on + strandat 1639.391 kb on + strandat 1639.420 kb on + strandat 1639.420 kb on + strandat 1639.420 kb on + strandat 1639.421 kb on - strandat 1639.421 kb on - strandat 1639.514 kb on + strandat 1639.563 kb on - strandat 1639.629 kb on + strand, within MPMX19_01561at 1639.629 kb on + strand, within MPMX19_01561at 1639.630 kb on - strand, within MPMX19_01561at 1639.630 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.697 kb on - strand, within MPMX19_01561at 1639.883 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1639.965 kb on - strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.007 kb on + strand, within MPMX19_01561at 1640.046 kb on + strand, within MPMX19_01561at 1640.046 kb on + strand, within MPMX19_01561at 1640.047 kb on - strand, within MPMX19_01561at 1640.081 kb on + strandat 1640.082 kb on - strandat 1640.082 kb on - strandat 1640.082 kb on - strandat 1640.082 kb on - strandat 1640.128 kb on + strandat 1640.129 kb on - strandat 1640.129 kb on - strandat 1640.215 kb on + strandat 1640.216 kb on - strandat 1640.247 kb on - strandat 1640.247 kb on - strandat 1640.247 kb on - strandat 1640.247 kb on - strandat 1640.247 kb on - strandat 1640.257 kb on + strandat 1640.358 kb on + strand, within MPMX19_01562at 1640.358 kb on + strand, within MPMX19_01562at 1640.358 kb on + strand, within MPMX19_01562at 1640.358 kb on + strand, within MPMX19_01562at 1640.358 kb on + strand, within MPMX19_01562at 1640.359 kb on - strand, within MPMX19_01562at 1640.359 kb on - strand, within MPMX19_01562at 1640.359 kb on - strand, within MPMX19_01562at 1640.371 kb on + strand, within MPMX19_01562at 1640.371 kb on + strand, within MPMX19_01562at 1640.372 kb on - strand, within MPMX19_01562at 1640.372 kb on - strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.380 kb on + strand, within MPMX19_01562at 1640.381 kb on - strand, within MPMX19_01562at 1640.381 kb on - strand, within MPMX19_01562at 1640.381 kb on - strand, within MPMX19_01562at 1640.381 kb on - strand, within MPMX19_01562at 1640.381 kb on - strand, within MPMX19_01562at 1640.381 kb on - strand, within MPMX19_01562at 1640.460 kb on + strand, within MPMX19_01562at 1640.460 kb on + strand, within MPMX19_01562at 1640.460 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.555 kb on + strand, within MPMX19_01562at 1640.556 kb on - strand, within MPMX19_01562at 1640.556 kb on - strand, within MPMX19_01562at 1640.556 kb on - strand, within MPMX19_01562at 1640.556 kb on - strand, within MPMX19_01562at 1640.556 kb on - strand, within MPMX19_01562at 1640.557 kb on + strand, within MPMX19_01562at 1640.557 kb on + strand, within MPMX19_01562at 1640.557 kb on + strand, within MPMX19_01562at 1640.557 kb on + strand, within MPMX19_01562at 1640.557 kb on + strand, within MPMX19_01562at 1640.557 kb on + strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.558 kb on - strand, within MPMX19_01562at 1640.580 kb on + strand, within MPMX19_01562at 1640.580 kb on + strand, within MPMX19_01562at 1640.580 kb on + strand, within MPMX19_01562at 1640.580 kb on + strand, within MPMX19_01562at 1640.581 kb on - strand, within MPMX19_01562at 1640.581 kb on - strand, within MPMX19_01562at 1640.581 kb on - strand, within MPMX19_01562at 1640.629 kb on + strand, within MPMX19_01562at 1640.629 kb on + strand, within MPMX19_01562at 1640.630 kb on - strand, within MPMX19_01562at 1640.630 kb on - strand, within MPMX19_01562at 1640.630 kb on - strand, within MPMX19_01562at 1640.878 kb on + strandat 1640.878 kb on + strandat 1640.878 kb on + strandat 1640.878 kb on + strandat 1640.878 kb on + strandat 1640.878 kb on + strandat 1640.879 kb on - strandat 1640.879 kb on - strandat 1640.919 kb on - strandat 1640.919 kb on - strandat 1640.919 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.921 kb on - strandat 1640.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,638,701 - MPMX19_01560 0.27 -1.7
1,638,704 - MPMX19_01560 0.27 -1.5
1,638,789 - MPMX19_01560 0.36 -2.0
1,639,048 + MPMX19_01560 0.65 +0.0
1,639,064 + MPMX19_01560 0.67 -0.6
1,639,064 + MPMX19_01560 0.67 -1.5
1,639,065 - MPMX19_01560 0.67 -0.6
1,639,273 - -2.0
1,639,317 + -0.2
1,639,337 + -3.1
1,639,391 + -1.0
1,639,420 + -0.3
1,639,420 + -0.4
1,639,420 + -1.2
1,639,421 - -1.5
1,639,421 - -0.4
1,639,514 + -1.4
1,639,563 - -0.5
1,639,629 + MPMX19_01561 0.14 -0.8
1,639,629 + MPMX19_01561 0.14 -0.8
1,639,630 - MPMX19_01561 0.14 +0.2
1,639,630 - MPMX19_01561 0.14 +0.0
1,639,697 - MPMX19_01561 0.26 -1.0
1,639,697 - MPMX19_01561 0.26 -2.8
1,639,697 - MPMX19_01561 0.26 +0.1
1,639,697 - MPMX19_01561 0.26 -0.5
1,639,697 - MPMX19_01561 0.26 -1.8
1,639,697 - MPMX19_01561 0.26 -0.6
1,639,697 - MPMX19_01561 0.26 -0.8
1,639,697 - MPMX19_01561 0.26 +1.0
1,639,697 - MPMX19_01561 0.26 -0.4
1,639,883 - MPMX19_01561 0.60 -0.5
1,639,965 - MPMX19_01561 0.74 -0.2
1,639,965 - MPMX19_01561 0.74 -2.8
1,639,965 - MPMX19_01561 0.74 +1.2
1,639,965 - MPMX19_01561 0.74 -2.0
1,639,965 - MPMX19_01561 0.74 +0.3
1,639,965 - MPMX19_01561 0.74 -0.6
1,639,965 - MPMX19_01561 0.74 -1.1
1,639,965 - MPMX19_01561 0.74 -1.4
1,639,965 - MPMX19_01561 0.74 -1.9
1,639,965 - MPMX19_01561 0.74 -0.8
1,639,965 - MPMX19_01561 0.74 -0.8
1,639,965 - MPMX19_01561 0.74 +0.0
1,640,007 + MPMX19_01561 0.82 -1.4
1,640,007 + MPMX19_01561 0.82 +0.3
1,640,007 + MPMX19_01561 0.82 +0.5
1,640,007 + MPMX19_01561 0.82 +0.0
1,640,007 + MPMX19_01561 0.82 -0.8
1,640,007 + MPMX19_01561 0.82 -0.8
1,640,007 + MPMX19_01561 0.82 +0.3
1,640,007 + MPMX19_01561 0.82 -1.2
1,640,007 + MPMX19_01561 0.82 +0.0
1,640,007 + MPMX19_01561 0.82 -0.6
1,640,007 + MPMX19_01561 0.82 -1.7
1,640,007 + MPMX19_01561 0.82 -0.2
1,640,007 + MPMX19_01561 0.82 +1.0
1,640,007 + MPMX19_01561 0.82 -2.3
1,640,007 + MPMX19_01561 0.82 -1.2
1,640,007 + MPMX19_01561 0.82 -1.2
1,640,007 + MPMX19_01561 0.82 +0.0
1,640,007 + MPMX19_01561 0.82 -0.6
1,640,007 + MPMX19_01561 0.82 -1.1
1,640,007 + MPMX19_01561 0.82 -2.2
1,640,046 + MPMX19_01561 0.89 -0.8
1,640,046 + MPMX19_01561 0.89 +0.5
1,640,047 - MPMX19_01561 0.89 +0.8
1,640,081 + -2.3
1,640,082 - -0.7
1,640,082 - -0.2
1,640,082 - +0.1
1,640,082 - -1.6
1,640,128 + -0.5
1,640,129 - -2.1
1,640,129 - -0.7
1,640,215 + +0.8
1,640,216 - -1.6
1,640,247 - +0.2
1,640,247 - -1.2
1,640,247 - -2.1
1,640,247 - -2.2
1,640,247 - +0.6
1,640,257 + -0.7
1,640,358 + MPMX19_01562 0.15 -2.5
1,640,358 + MPMX19_01562 0.15 -2.6
1,640,358 + MPMX19_01562 0.15 +0.2
1,640,358 + MPMX19_01562 0.15 -0.0
1,640,358 + MPMX19_01562 0.15 +0.0
1,640,359 - MPMX19_01562 0.15 +0.0
1,640,359 - MPMX19_01562 0.15 -0.5
1,640,359 - MPMX19_01562 0.15 +2.3
1,640,371 + MPMX19_01562 0.17 -0.5
1,640,371 + MPMX19_01562 0.17 +0.0
1,640,372 - MPMX19_01562 0.17 +1.0
1,640,372 - MPMX19_01562 0.17 -0.2
1,640,380 + MPMX19_01562 0.19 +0.9
1,640,380 + MPMX19_01562 0.19 -0.7
1,640,380 + MPMX19_01562 0.19 +1.3
1,640,380 + MPMX19_01562 0.19 -1.1
1,640,380 + MPMX19_01562 0.19 -0.4
1,640,380 + MPMX19_01562 0.19 -0.2
1,640,380 + MPMX19_01562 0.19 -0.9
1,640,380 + MPMX19_01562 0.19 +0.8
1,640,380 + MPMX19_01562 0.19 +2.3
1,640,381 - MPMX19_01562 0.19 -0.5
1,640,381 - MPMX19_01562 0.19 -2.9
1,640,381 - MPMX19_01562 0.19 +0.1
1,640,381 - MPMX19_01562 0.19 -0.4
1,640,381 - MPMX19_01562 0.19 -1.9
1,640,381 - MPMX19_01562 0.19 -2.5
1,640,460 + MPMX19_01562 0.33 +1.3
1,640,460 + MPMX19_01562 0.33 -2.2
1,640,460 + MPMX19_01562 0.33 -0.2
1,640,555 + MPMX19_01562 0.50 -0.8
1,640,555 + MPMX19_01562 0.50 -0.2
1,640,555 + MPMX19_01562 0.50 +1.0
1,640,555 + MPMX19_01562 0.50 -1.1
1,640,555 + MPMX19_01562 0.50 -0.8
1,640,555 + MPMX19_01562 0.50 -0.8
1,640,555 + MPMX19_01562 0.50 +1.0
1,640,555 + MPMX19_01562 0.50 +0.9
1,640,556 - MPMX19_01562 0.51 +0.8
1,640,556 - MPMX19_01562 0.51 -1.8
1,640,556 - MPMX19_01562 0.51 -1.8
1,640,556 - MPMX19_01562 0.51 -2.3
1,640,556 - MPMX19_01562 0.51 +0.0
1,640,557 + MPMX19_01562 0.51 -0.5
1,640,557 + MPMX19_01562 0.51 -1.6
1,640,557 + MPMX19_01562 0.51 -1.6
1,640,557 + MPMX19_01562 0.51 -1.0
1,640,557 + MPMX19_01562 0.51 -0.2
1,640,557 + MPMX19_01562 0.51 -2.5
1,640,558 - MPMX19_01562 0.51 -0.8
1,640,558 - MPMX19_01562 0.51 -0.2
1,640,558 - MPMX19_01562 0.51 -0.5
1,640,558 - MPMX19_01562 0.51 -1.0
1,640,558 - MPMX19_01562 0.51 +0.3
1,640,558 - MPMX19_01562 0.51 +0.1
1,640,558 - MPMX19_01562 0.51 -0.7
1,640,558 - MPMX19_01562 0.51 +0.2
1,640,580 + MPMX19_01562 0.55 -0.5
1,640,580 + MPMX19_01562 0.55 -0.4
1,640,580 + MPMX19_01562 0.55 +1.0
1,640,580 + MPMX19_01562 0.55 +1.3
1,640,581 - MPMX19_01562 0.55 -0.2
1,640,581 - MPMX19_01562 0.55 -1.2
1,640,581 - MPMX19_01562 0.55 +0.3
1,640,629 + MPMX19_01562 0.64 -0.6
1,640,629 + MPMX19_01562 0.64 -1.7
1,640,630 - MPMX19_01562 0.64 -0.5
1,640,630 - MPMX19_01562 0.64 -0.6
1,640,630 - MPMX19_01562 0.64 -1.4
1,640,878 + +0.8
1,640,878 + -1.0
1,640,878 + -1.4
1,640,878 + -0.2
1,640,878 + -2.2
1,640,878 + -0.2
1,640,879 - -0.9
1,640,879 - -1.0
1,640,919 - -0.4
1,640,919 - -1.4
1,640,919 - +1.0
1,640,921 - -0.9
1,640,921 - +0.3
1,640,921 - +0.0
1,640,921 - -1.2
1,640,921 - -0.5
1,640,921 - +0.2
1,640,921 - +1.1
1,640,921 - -0.4
1,640,921 - -1.0
1,640,921 - -1.6
1,640,921 - -0.2
1,640,921 - +1.1
1,640,921 - +0.1
1,640,921 - +2.3
1,640,921 - +0.2
1,640,921 - -1.0
1,640,921 - -0.9
1,640,921 - -0.8
1,640,921 - -0.7
1,640,921 - -0.2
1,640,921 - -1.0
1,640,921 - -0.6
1,640,921 - +0.1
1,640,921 - -0.8
1,640,921 - +0.7
1,640,921 - -0.8
1,640,921 - -0.5
1,640,921 - +0.3
1,640,921 - -1.4
1,640,921 - -0.6
1,640,921 - -0.1
1,640,921 - -0.2
1,640,921 - -0.1
1,640,921 - +0.0
1,640,931 - +0.0

Or see this region's nucleotide sequence