Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01340

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01339 and MPMX19_01340 are separated by 30 nucleotidesMPMX19_01340 and MPMX19_01341 are separated by 574 nucleotides MPMX19_01339: MPMX19_01339 - Cystathionine beta-lyase MetC, at 1,393,231 to 1,394,409 _01339 MPMX19_01340: MPMX19_01340 - Phosphoribosyl-AMP cyclohydrolase, at 1,394,440 to 1,394,874 _01340 MPMX19_01341: MPMX19_01341 - hypothetical protein, at 1,395,449 to 1,396,132 _01341 Position (kb) 1394 1395Strain fitness (log2 ratio) -2 -1 0 1 2at 1393.459 kb on + strand, within MPMX19_01339at 1393.460 kb on - strand, within MPMX19_01339at 1393.558 kb on + strand, within MPMX19_01339at 1393.558 kb on + strand, within MPMX19_01339at 1393.600 kb on + strand, within MPMX19_01339at 1393.601 kb on - strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.621 kb on + strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.622 kb on - strand, within MPMX19_01339at 1393.624 kb on - strand, within MPMX19_01339at 1393.724 kb on + strand, within MPMX19_01339at 1393.724 kb on + strand, within MPMX19_01339at 1393.724 kb on + strand, within MPMX19_01339at 1393.725 kb on - strand, within MPMX19_01339at 1393.725 kb on - strand, within MPMX19_01339at 1393.725 kb on - strand, within MPMX19_01339at 1393.796 kb on + strand, within MPMX19_01339at 1393.796 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.852 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.972 kb on + strand, within MPMX19_01339at 1393.973 kb on - strand, within MPMX19_01339at 1393.973 kb on - strand, within MPMX19_01339at 1393.973 kb on - strand, within MPMX19_01339at 1394.233 kb on + strand, within MPMX19_01339at 1394.233 kb on + strand, within MPMX19_01339at 1394.233 kb on + strand, within MPMX19_01339at 1394.233 kb on + strand, within MPMX19_01339at 1394.233 kb on + strand, within MPMX19_01339at 1394.233 kb on + strand, within MPMX19_01339at 1394.234 kb on - strand, within MPMX19_01339at 1394.234 kb on - strand, within MPMX19_01339at 1394.845 kb on + strandat 1394.846 kb on - strandat 1394.846 kb on - strandat 1394.846 kb on - strandat 1394.969 kb on - strandat 1394.970 kb on + strandat 1394.970 kb on + strandat 1394.970 kb on + strandat 1394.970 kb on + strandat 1394.971 kb on - strandat 1394.971 kb on - strandat 1394.971 kb on - strandat 1394.989 kb on - strandat 1395.000 kb on + strandat 1395.000 kb on + strandat 1395.000 kb on + strandat 1395.000 kb on + strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.001 kb on - strandat 1395.002 kb on + strandat 1395.002 kb on + strandat 1395.003 kb on - strandat 1395.003 kb on - strandat 1395.003 kb on - strandat 1395.003 kb on - strandat 1395.003 kb on - strandat 1395.003 kb on - strandat 1395.003 kb on - strandat 1395.038 kb on - strandat 1395.147 kb on + strandat 1395.219 kb on + strandat 1395.219 kb on + strandat 1395.220 kb on - strandat 1395.324 kb on + strandat 1395.354 kb on + strandat 1395.354 kb on + strandat 1395.354 kb on + strandat 1395.355 kb on - strandat 1395.355 kb on - strandat 1395.355 kb on - strandat 1395.355 kb on - strandat 1395.365 kb on + strandat 1395.365 kb on + strandat 1395.396 kb on + strandat 1395.397 kb on - strandat 1395.397 kb on - strandat 1395.408 kb on - strandat 1395.569 kb on + strand, within MPMX19_01341at 1395.569 kb on + strand, within MPMX19_01341at 1395.569 kb on + strand, within MPMX19_01341at 1395.570 kb on - strand, within MPMX19_01341at 1395.570 kb on - strand, within MPMX19_01341at 1395.570 kb on - strand, within MPMX19_01341at 1395.570 kb on - strand, within MPMX19_01341at 1395.570 kb on - strand, within MPMX19_01341at 1395.659 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.827 kb on + strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.828 kb on - strand, within MPMX19_01341at 1395.836 kb on + strand, within MPMX19_01341at 1395.837 kb on - strand, within MPMX19_01341at 1395.837 kb on - strand, within MPMX19_01341at 1395.837 kb on - strand, within MPMX19_01341at 1395.837 kb on - strand, within MPMX19_01341

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,393,459 + MPMX19_01339 0.19 -1.3
1,393,460 - MPMX19_01339 0.19 +0.3
1,393,558 + MPMX19_01339 0.28 +0.0
1,393,558 + MPMX19_01339 0.28 -0.3
1,393,600 + MPMX19_01339 0.31 -1.0
1,393,601 - MPMX19_01339 0.31 -0.5
1,393,621 + MPMX19_01339 0.33 -0.9
1,393,621 + MPMX19_01339 0.33 -2.3
1,393,621 + MPMX19_01339 0.33 -1.7
1,393,621 + MPMX19_01339 0.33 -1.2
1,393,621 + MPMX19_01339 0.33 -1.0
1,393,621 + MPMX19_01339 0.33 -2.7
1,393,621 + MPMX19_01339 0.33 -1.3
1,393,621 + MPMX19_01339 0.33 -0.2
1,393,621 + MPMX19_01339 0.33 -1.5
1,393,621 + MPMX19_01339 0.33 -1.0
1,393,621 + MPMX19_01339 0.33 -0.4
1,393,621 + MPMX19_01339 0.33 -1.2
1,393,621 + MPMX19_01339 0.33 -2.7
1,393,621 + MPMX19_01339 0.33 -1.5
1,393,621 + MPMX19_01339 0.33 -1.2
1,393,621 + MPMX19_01339 0.33 -1.8
1,393,621 + MPMX19_01339 0.33 +1.1
1,393,622 - MPMX19_01339 0.33 -0.8
1,393,622 - MPMX19_01339 0.33 -1.2
1,393,622 - MPMX19_01339 0.33 -2.0
1,393,622 - MPMX19_01339 0.33 -0.2
1,393,622 - MPMX19_01339 0.33 +1.7
1,393,622 - MPMX19_01339 0.33 -0.7
1,393,622 - MPMX19_01339 0.33 -1.2
1,393,622 - MPMX19_01339 0.33 -1.3
1,393,624 - MPMX19_01339 0.33 -0.3
1,393,724 + MPMX19_01339 0.42 +1.1
1,393,724 + MPMX19_01339 0.42 -0.9
1,393,724 + MPMX19_01339 0.42 -2.5
1,393,725 - MPMX19_01339 0.42 -0.9
1,393,725 - MPMX19_01339 0.42 +0.3
1,393,725 - MPMX19_01339 0.42 +0.3
1,393,796 + MPMX19_01339 0.48 -1.0
1,393,796 + MPMX19_01339 0.48 -0.1
1,393,852 + MPMX19_01339 0.53 -0.3
1,393,852 + MPMX19_01339 0.53 -1.2
1,393,852 + MPMX19_01339 0.53 +0.3
1,393,852 + MPMX19_01339 0.53 -0.8
1,393,852 + MPMX19_01339 0.53 +0.3
1,393,852 + MPMX19_01339 0.53 +0.5
1,393,852 + MPMX19_01339 0.53 +2.3
1,393,852 + MPMX19_01339 0.53 -0.9
1,393,852 + MPMX19_01339 0.53 -2.3
1,393,852 + MPMX19_01339 0.53 -0.5
1,393,852 + MPMX19_01339 0.53 +1.3
1,393,852 + MPMX19_01339 0.53 -1.0
1,393,852 + MPMX19_01339 0.53 -0.7
1,393,852 + MPMX19_01339 0.53 -1.5
1,393,852 + MPMX19_01339 0.53 -1.4
1,393,852 + MPMX19_01339 0.53 -0.2
1,393,852 + MPMX19_01339 0.53 -0.9
1,393,852 + MPMX19_01339 0.53 -0.9
1,393,852 + MPMX19_01339 0.53 -0.4
1,393,852 + MPMX19_01339 0.53 -1.3
1,393,852 + MPMX19_01339 0.53 -0.9
1,393,852 + MPMX19_01339 0.53 -1.5
1,393,852 + MPMX19_01339 0.53 +0.1
1,393,852 + MPMX19_01339 0.53 -1.8
1,393,852 + MPMX19_01339 0.53 -0.7
1,393,852 + MPMX19_01339 0.53 -2.2
1,393,852 + MPMX19_01339 0.53 +1.1
1,393,852 + MPMX19_01339 0.53 -0.0
1,393,852 + MPMX19_01339 0.53 -1.2
1,393,852 + MPMX19_01339 0.53 -1.0
1,393,972 + MPMX19_01339 0.63 +0.7
1,393,972 + MPMX19_01339 0.63 +0.7
1,393,972 + MPMX19_01339 0.63 -1.4
1,393,972 + MPMX19_01339 0.63 -0.5
1,393,972 + MPMX19_01339 0.63 -1.8
1,393,972 + MPMX19_01339 0.63 -2.0
1,393,972 + MPMX19_01339 0.63 -2.3
1,393,972 + MPMX19_01339 0.63 -0.5
1,393,972 + MPMX19_01339 0.63 -0.0
1,393,972 + MPMX19_01339 0.63 +1.3
1,393,972 + MPMX19_01339 0.63 -2.0
1,393,972 + MPMX19_01339 0.63 -2.4
1,393,973 - MPMX19_01339 0.63 +0.3
1,393,973 - MPMX19_01339 0.63 -0.5
1,393,973 - MPMX19_01339 0.63 -1.0
1,394,233 + MPMX19_01339 0.85 -0.2
1,394,233 + MPMX19_01339 0.85 -1.4
1,394,233 + MPMX19_01339 0.85 -0.7
1,394,233 + MPMX19_01339 0.85 -0.5
1,394,233 + MPMX19_01339 0.85 -0.8
1,394,233 + MPMX19_01339 0.85 -0.6
1,394,234 - MPMX19_01339 0.85 -1.5
1,394,234 - MPMX19_01339 0.85 -1.8
1,394,845 + -0.5
1,394,846 - +0.7
1,394,846 - -0.3
1,394,846 - +1.0
1,394,969 - -1.0
1,394,970 + +0.3
1,394,970 + -0.4
1,394,970 + +0.6
1,394,970 + -1.0
1,394,971 - -1.6
1,394,971 - +0.3
1,394,971 - +1.3
1,394,989 - +0.1
1,395,000 + +0.1
1,395,000 + -2.1
1,395,000 + +0.5
1,395,000 + -0.1
1,395,001 - -0.0
1,395,001 - -0.6
1,395,001 - -0.3
1,395,001 - -0.5
1,395,001 - +1.3
1,395,001 - -2.1
1,395,001 - -0.9
1,395,001 - -0.0
1,395,001 - +0.7
1,395,001 - +0.6
1,395,002 + -0.4
1,395,002 + -1.5
1,395,003 - -0.5
1,395,003 - +0.5
1,395,003 - -1.3
1,395,003 - -1.2
1,395,003 - +0.7
1,395,003 - -1.3
1,395,003 - +2.3
1,395,038 - -0.4
1,395,147 + -1.3
1,395,219 + +0.7
1,395,219 + -0.5
1,395,220 - +0.2
1,395,324 + -0.0
1,395,354 + -1.4
1,395,354 + -1.5
1,395,354 + -0.5
1,395,355 - -1.0
1,395,355 - -1.2
1,395,355 - -0.5
1,395,355 - +1.1
1,395,365 + -0.3
1,395,365 + +0.3
1,395,396 + -0.3
1,395,397 - -1.5
1,395,397 - -1.4
1,395,408 - -1.4
1,395,569 + MPMX19_01341 0.18 -0.7
1,395,569 + MPMX19_01341 0.18 -0.9
1,395,569 + MPMX19_01341 0.18 +0.5
1,395,570 - MPMX19_01341 0.18 +0.1
1,395,570 - MPMX19_01341 0.18 +0.1
1,395,570 - MPMX19_01341 0.18 +0.3
1,395,570 - MPMX19_01341 0.18 -0.5
1,395,570 - MPMX19_01341 0.18 +0.0
1,395,659 + MPMX19_01341 0.31 -0.5
1,395,827 + MPMX19_01341 0.55 -0.1
1,395,827 + MPMX19_01341 0.55 -1.2
1,395,827 + MPMX19_01341 0.55 -1.0
1,395,827 + MPMX19_01341 0.55 -2.3
1,395,827 + MPMX19_01341 0.55 -1.0
1,395,827 + MPMX19_01341 0.55 -2.1
1,395,827 + MPMX19_01341 0.55 -0.3
1,395,827 + MPMX19_01341 0.55 -1.2
1,395,827 + MPMX19_01341 0.55 -0.7
1,395,827 + MPMX19_01341 0.55 -1.9
1,395,827 + MPMX19_01341 0.55 -1.3
1,395,828 - MPMX19_01341 0.55 -1.6
1,395,828 - MPMX19_01341 0.55 -0.4
1,395,828 - MPMX19_01341 0.55 -0.9
1,395,828 - MPMX19_01341 0.55 -0.7
1,395,828 - MPMX19_01341 0.55 -1.4
1,395,828 - MPMX19_01341 0.55 -1.3
1,395,828 - MPMX19_01341 0.55 -1.6
1,395,828 - MPMX19_01341 0.55 -1.6
1,395,828 - MPMX19_01341 0.55 +0.7
1,395,828 - MPMX19_01341 0.55 -1.9
1,395,828 - MPMX19_01341 0.55 -2.0
1,395,828 - MPMX19_01341 0.55 -0.4
1,395,836 + MPMX19_01341 0.57 -2.6
1,395,837 - MPMX19_01341 0.57 +0.8
1,395,837 - MPMX19_01341 0.57 +0.3
1,395,837 - MPMX19_01341 0.57 +1.3
1,395,837 - MPMX19_01341 0.57 -0.5

Or see this region's nucleotide sequence