Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00220

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00219 and MPMX19_00220 are separated by 423 nucleotidesMPMX19_00220 and MPMX19_00221 are separated by 144 nucleotides MPMX19_00219: MPMX19_00219 - hypothetical protein, at 221,025 to 221,942 _00219 MPMX19_00220: MPMX19_00220 - Transcriptional regulatory protein FixJ, at 222,366 to 223,079 _00220 MPMX19_00221: MPMX19_00221 - hypothetical protein, at 223,224 to 224,441 _00221 Position (kb) 222 223 224Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.556 kb on + strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.557 kb on - strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.565 kb on + strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.566 kb on - strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.658 kb on + strand, within MPMX19_00219at 221.659 kb on + strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.659 kb on - strand, within MPMX19_00219at 221.724 kb on + strand, within MPMX19_00219at 221.724 kb on + strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.725 kb on - strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.754 kb on + strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.755 kb on - strand, within MPMX19_00219at 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.877 kb on + strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.878 kb on - strandat 221.900 kb on - strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.983 kb on + strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.984 kb on - strandat 221.999 kb on + strandat 222.000 kb on - strandat 222.057 kb on + strandat 222.088 kb on + strandat 222.088 kb on + strandat 222.088 kb on + strandat 222.089 kb on - strandat 222.118 kb on + strandat 222.118 kb on + strandat 222.119 kb on - strandat 222.202 kb on + strandat 222.202 kb on + strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.203 kb on - strandat 222.205 kb on + strandat 222.222 kb on + strandat 222.222 kb on + strandat 222.222 kb on + strandat 222.223 kb on - strandat 222.223 kb on - strandat 222.275 kb on - strandat 223.179 kb on - strandat 223.179 kb on - strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.223 kb on + strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.224 kb on - strandat 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.374 kb on + strand, within MPMX19_00221at 223.375 kb on - strand, within MPMX19_00221at 223.375 kb on - strand, within MPMX19_00221at 223.375 kb on - strand, within MPMX19_00221at 223.375 kb on - strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.449 kb on + strand, within MPMX19_00221at 223.450 kb on - strand, within MPMX19_00221at 223.450 kb on - strand, within MPMX19_00221at 223.450 kb on - strand, within MPMX19_00221at 223.450 kb on - strand, within MPMX19_00221at 223.450 kb on - strand, within MPMX19_00221at 223.450 kb on - strand, within MPMX19_00221

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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221,556 + MPMX19_00219 0.58 -1.3
221,556 + MPMX19_00219 0.58 -0.8
221,556 + MPMX19_00219 0.58 -0.6
221,556 + MPMX19_00219 0.58 -1.4
221,556 + MPMX19_00219 0.58 +1.5
221,556 + MPMX19_00219 0.58 -1.9
221,556 + MPMX19_00219 0.58 -0.1
221,556 + MPMX19_00219 0.58 -0.5
221,556 + MPMX19_00219 0.58 -0.0
221,556 + MPMX19_00219 0.58 -2.1
221,556 + MPMX19_00219 0.58 -0.4
221,556 + MPMX19_00219 0.58 -1.1
221,556 + MPMX19_00219 0.58 +1.0
221,556 + MPMX19_00219 0.58 -0.9
221,557 - MPMX19_00219 0.58 -0.7
221,557 - MPMX19_00219 0.58 -0.1
221,557 - MPMX19_00219 0.58 +0.1
221,557 - MPMX19_00219 0.58 -0.4
221,557 - MPMX19_00219 0.58 -1.0
221,557 - MPMX19_00219 0.58 -2.9
221,557 - MPMX19_00219 0.58 -2.8
221,557 - MPMX19_00219 0.58 -0.5
221,557 - MPMX19_00219 0.58 -1.1
221,557 - MPMX19_00219 0.58 -0.4
221,557 - MPMX19_00219 0.58 +0.6
221,557 - MPMX19_00219 0.58 +0.5
221,557 - MPMX19_00219 0.58 -0.5
221,557 - MPMX19_00219 0.58 -0.4
221,557 - MPMX19_00219 0.58 -0.1
221,557 - MPMX19_00219 0.58 -0.2
221,557 - MPMX19_00219 0.58 -1.0
221,557 - MPMX19_00219 0.58 -1.1
221,565 + MPMX19_00219 0.59 -0.8
221,565 + MPMX19_00219 0.59 -0.1
221,565 + MPMX19_00219 0.59 -1.9
221,565 + MPMX19_00219 0.59 -2.2
221,565 + MPMX19_00219 0.59 -0.3
221,565 + MPMX19_00219 0.59 -0.3
221,566 - MPMX19_00219 0.59 -1.8
221,566 - MPMX19_00219 0.59 -1.4
221,566 - MPMX19_00219 0.59 -0.9
221,566 - MPMX19_00219 0.59 +0.1
221,566 - MPMX19_00219 0.59 +0.1
221,566 - MPMX19_00219 0.59 -0.7
221,658 + MPMX19_00219 0.69 -0.1
221,658 + MPMX19_00219 0.69 +1.2
221,658 + MPMX19_00219 0.69 -1.2
221,658 + MPMX19_00219 0.69 +0.6
221,658 + MPMX19_00219 0.69 +0.4
221,658 + MPMX19_00219 0.69 -0.1
221,658 + MPMX19_00219 0.69 +0.5
221,658 + MPMX19_00219 0.69 -0.4
221,658 + MPMX19_00219 0.69 +0.1
221,658 + MPMX19_00219 0.69 -0.3
221,658 + MPMX19_00219 0.69 -0.1
221,658 + MPMX19_00219 0.69 -0.7
221,658 + MPMX19_00219 0.69 -1.2
221,658 + MPMX19_00219 0.69 -0.4
221,658 + MPMX19_00219 0.69 -0.2
221,658 + MPMX19_00219 0.69 -1.1
221,658 + MPMX19_00219 0.69 -0.4
221,658 + MPMX19_00219 0.69 +2.5
221,658 + MPMX19_00219 0.69 -0.6
221,658 + MPMX19_00219 0.69 +0.9
221,658 + MPMX19_00219 0.69 -1.2
221,658 + MPMX19_00219 0.69 -0.5
221,658 + MPMX19_00219 0.69 +0.5
221,658 + MPMX19_00219 0.69 -1.7
221,658 + MPMX19_00219 0.69 -1.9
221,659 + MPMX19_00219 0.69 -0.1
221,659 - MPMX19_00219 0.69 -0.1
221,659 - MPMX19_00219 0.69 -1.1
221,659 - MPMX19_00219 0.69 -0.0
221,659 - MPMX19_00219 0.69 +0.4
221,659 - MPMX19_00219 0.69 -0.4
221,659 - MPMX19_00219 0.69 -0.1
221,659 - MPMX19_00219 0.69 -0.1
221,659 - MPMX19_00219 0.69 -0.3
221,659 - MPMX19_00219 0.69 -0.7
221,659 - MPMX19_00219 0.69 -0.7
221,659 - MPMX19_00219 0.69 -0.4
221,659 - MPMX19_00219 0.69 -0.4
221,659 - MPMX19_00219 0.69 +0.6
221,659 - MPMX19_00219 0.69 -0.5
221,724 + MPMX19_00219 0.76 +1.1
221,724 + MPMX19_00219 0.76 -1.9
221,725 - MPMX19_00219 0.76 -0.5
221,725 - MPMX19_00219 0.76 -0.2
221,725 - MPMX19_00219 0.76 -1.1
221,725 - MPMX19_00219 0.76 -0.2
221,754 + MPMX19_00219 0.79 -0.1
221,754 + MPMX19_00219 0.79 -0.7
221,754 + MPMX19_00219 0.79 -0.5
221,754 + MPMX19_00219 0.79 +0.5
221,754 + MPMX19_00219 0.79 +0.9
221,755 - MPMX19_00219 0.80 -2.1
221,755 - MPMX19_00219 0.80 -1.1
221,755 - MPMX19_00219 0.80 +0.3
221,755 - MPMX19_00219 0.80 -1.0
221,755 - MPMX19_00219 0.80 -2.1
221,755 - MPMX19_00219 0.80 -0.1
221,755 - MPMX19_00219 0.80 +1.0
221,755 - MPMX19_00219 0.80 -0.5
221,755 - MPMX19_00219 0.80 -0.5
221,755 - MPMX19_00219 0.80 -1.0
221,877 + -0.5
221,877 + -0.9
221,877 + -0.8
221,877 + +0.1
221,877 + -1.4
221,877 + -0.4
221,877 + -1.0
221,877 + -2.2
221,878 - -0.5
221,878 - -1.9
221,878 - +0.9
221,878 - +1.0
221,878 - -1.5
221,900 - -0.9
221,983 + -0.1
221,983 + +0.6
221,983 + -0.7
221,983 + -1.0
221,983 + +0.1
221,983 + -0.5
221,983 + +0.6
221,983 + -1.2
221,983 + -0.9
221,984 - +0.1
221,984 - +1.1
221,984 - -1.2
221,984 - +0.5
221,984 - -0.1
221,984 - -0.8
221,984 - -0.4
221,984 - -1.1
221,984 - +0.0
221,999 + -0.4
222,000 - +0.6
222,057 + -0.1
222,088 + -1.1
222,088 + +0.1
222,088 + -0.2
222,089 - -0.5
222,118 + -1.0
222,118 + -0.1
222,119 - -0.9
222,202 + -0.0
222,202 + -1.1
222,203 - +0.7
222,203 - -1.5
222,203 - -0.9
222,203 - -0.9
222,203 - -1.1
222,203 - -0.1
222,205 + +0.9
222,222 + +0.9
222,222 + +0.5
222,222 + +2.5
222,223 - +0.1
222,223 - +0.1
222,275 - +0.1
223,179 - -0.9
223,179 - -0.5
223,223 + +0.0
223,223 + +0.5
223,223 + -0.7
223,223 + -0.9
223,223 + -1.0
223,223 + -0.0
223,223 + -1.2
223,223 + -0.2
223,223 + -0.9
223,223 + +0.9
223,223 + -2.1
223,223 + -1.9
223,223 + -0.9
223,223 + +0.6
223,223 + +0.9
223,223 + -1.5
223,223 + -0.9
223,223 + -2.3
223,223 + -1.5
223,223 + +0.1
223,223 + -0.6
223,223 + -0.7
223,223 + -0.7
223,223 + -0.1
223,223 + -1.0
223,224 - -0.9
223,224 - -1.2
223,224 - +0.6
223,224 - +1.3
223,224 - -0.5
223,224 - -0.5
223,224 - -1.5
223,224 - -1.2
223,224 - -0.9
223,224 - -0.1
223,224 - -2.6
223,224 - +0.5
223,224 - -0.4
223,224 - -0.6
223,224 - -0.4
223,224 - -0.1
223,224 - -1.8
223,224 - -0.9
223,224 - +0.9
223,224 - +0.1
223,224 - -1.1
223,374 + MPMX19_00221 0.12 +1.5
223,374 + MPMX19_00221 0.12 -0.7
223,374 + MPMX19_00221 0.12 -0.1
223,374 + MPMX19_00221 0.12 +0.5
223,374 + MPMX19_00221 0.12 +0.9
223,374 + MPMX19_00221 0.12 -1.0
223,374 + MPMX19_00221 0.12 -0.6
223,374 + MPMX19_00221 0.12 -1.4
223,375 - MPMX19_00221 0.12 -1.5
223,375 - MPMX19_00221 0.12 -1.1
223,375 - MPMX19_00221 0.12 -0.1
223,375 - MPMX19_00221 0.12 -0.7
223,449 + MPMX19_00221 0.18 -1.5
223,449 + MPMX19_00221 0.18 -0.0
223,449 + MPMX19_00221 0.18 -0.9
223,449 + MPMX19_00221 0.18 -0.9
223,449 + MPMX19_00221 0.18 -0.7
223,449 + MPMX19_00221 0.18 +0.5
223,449 + MPMX19_00221 0.18 -0.4
223,450 - MPMX19_00221 0.19 -1.1
223,450 - MPMX19_00221 0.19 -0.9
223,450 - MPMX19_00221 0.19 -0.5
223,450 - MPMX19_00221 0.19 -0.1
223,450 - MPMX19_00221 0.19 +0.3
223,450 - MPMX19_00221 0.19 -0.4

Or see this region's nucleotide sequence