Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20160

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsapB and sapC overlap by 14 nucleotidessapC and sapD overlap by 1 nucleotidessapD and sapF are separated by 1 nucleotidessapF and NOLOHH_20170 are separated by 70 nucleotides NOLOHH_20150: sapB - putrescine ABC transporter permease SapB, at 3,968,369 to 3,969,334 sapB NOLOHH_20155: sapC - peptide ABC transporter permease SapC, at 3,969,321 to 3,970,211 sapC NOLOHH_20160: sapD - peptide ABC transporter ATP-binding protein SapD, at 3,970,211 to 3,971,203 sapD NOLOHH_20165: sapF - peptide ABC transporter ATP-binding protein SapF, at 3,971,205 to 3,972,011 sapF NOLOHH_20170: NOLOHH_20170 - DUF559 domain-containing protein, at 3,972,082 to 3,972,432 _20170 Position (kb) 3970 3971 3972Strain fitness (log2 ratio) -2 -1 0 1at 3972.061 kb on - strandat 3972.088 kb on - strandat 3972.092 kb on + strandat 3972.093 kb on - strandat 3972.113 kb on + strandat 3972.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,972,061 - +0.3
3,972,088 - -2.3
3,972,092 + -0.3
3,972,093 - +0.3
3,972,113 + -0.0
3,972,114 - -1.3

Or see this region's nucleotide sequence