Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20155

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsapA and sapB overlap by 4 nucleotidessapB and sapC overlap by 14 nucleotidessapC and sapD overlap by 1 nucleotidessapD and sapF are separated by 1 nucleotides NOLOHH_20145: sapA - peptide ABC transporter substrate-binding protein SapA, at 3,966,729 to 3,968,372 sapA NOLOHH_20150: sapB - putrescine ABC transporter permease SapB, at 3,968,369 to 3,969,334 sapB NOLOHH_20155: sapC - peptide ABC transporter permease SapC, at 3,969,321 to 3,970,211 sapC NOLOHH_20160: sapD - peptide ABC transporter ATP-binding protein SapD, at 3,970,211 to 3,971,203 sapD NOLOHH_20165: sapF - peptide ABC transporter ATP-binding protein SapF, at 3,971,205 to 3,972,011 sapF Position (kb) 3969 3970 3971Strain fitness (log2 ratio) -1 0 1at 3968.693 kb on - strand, within sapB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,968,693 - sapB NOLOHH_20150 0.34 +0.3

Or see this region's nucleotide sequence