Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19270

Experiment: Bas67

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydcR and hicB are separated by 78 nucleotideshicB and hicA are separated by 24 nucleotideshicA and yncJ are separated by 281 nucleotidesyncJ and rlhA are separated by 91 nucleotides NOLOHH_19255: ydcR - Uncharacterized HTH-type transcriptional regulator YdcR, at 3,794,637 to 3,796,043 ydcR NOLOHH_19260: hicB - type II toxin-antitoxin system antitoxin HicB, at 3,796,122 to 3,796,559 hicB NOLOHH_19265: hicA - type II toxin-antitoxin system mRNA interferase toxin HicA, at 3,796,584 to 3,796,760 hicA NOLOHH_19270: yncJ - Uncharacterized protein YncJ, at 3,797,042 to 3,797,212 yncJ NOLOHH_19275: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 3,797,304 to 3,799,265 rlhA Position (kb) 3797 3798Strain fitness (log2 ratio) -1 0 1 2at 3796.059 kb on - strandat 3796.494 kb on - strand, within hicBat 3796.782 kb on - strandat 3796.782 kb on - strandat 3796.782 kb on - strandat 3796.784 kb on - strandat 3797.662 kb on + strand, within rlhAat 3797.665 kb on - strand, within rlhA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
remove
3,796,059 - +0.3
3,796,494 - hicB NOLOHH_19260 0.85 +0.6
3,796,782 - -0.7
3,796,782 - +1.4
3,796,782 - +1.9
3,796,784 - -0.7
3,797,662 + rlhA NOLOHH_19275 0.18 -0.3
3,797,665 - rlhA NOLOHH_19275 0.18 -0.7

Or see this region's nucleotide sequence