Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16705

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnudB and NOLOHH_16700 are separated by 28 nucleotidesNOLOHH_16700 and NOLOHH_16705 overlap by 1 nucleotidesNOLOHH_16705 and ruvC overlap by 1 nucleotidesruvC and NOLOHH_16715 are separated by 1 nucleotides NOLOHH_16695: nudB - dihydroneopterin triphosphate diphosphatase, at 3,281,831 to 3,282,340 nudB NOLOHH_16700: NOLOHH_16700 - putative transcriptional regulatory protein YebC, at 3,282,369 to 3,283,109 _16700 NOLOHH_16705: NOLOHH_16705 - Crossover junction endodeoxyribonuclease RuvC, at 3,283,109 to 3,283,144 _16705 NOLOHH_16710: ruvC - crossover junction endodeoxyribonuclease RuvC, at 3,283,144 to 3,283,665 ruvC NOLOHH_16715: NOLOHH_16715 - YebB family permuted papain-like enzyme, at 3,283,667 to 3,284,269 _16715 Position (kb) 3283 3284Strain fitness (log2 ratio) -1 0 1 2at 3282.147 kb on + strand, within nudBat 3282.178 kb on + strand, within nudBat 3282.248 kb on + strand, within nudBat 3282.286 kb on + strand, within nudBat 3282.324 kb on + strandat 3282.328 kb on + strandat 3282.446 kb on + strand, within NOLOHH_16700at 3282.627 kb on + strand, within NOLOHH_16700at 3282.636 kb on + strand, within NOLOHH_16700at 3282.885 kb on + strand, within NOLOHH_16700at 3283.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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3,282,147 + nudB NOLOHH_16695 0.62 -0.1
3,282,178 + nudB NOLOHH_16695 0.68 -0.7
3,282,248 + nudB NOLOHH_16695 0.82 +0.3
3,282,286 + nudB NOLOHH_16695 0.89 -1.0
3,282,324 + -1.0
3,282,328 + +1.3
3,282,446 + NOLOHH_16700 0.10 -0.7
3,282,627 + NOLOHH_16700 0.35 +1.8
3,282,636 + NOLOHH_16700 0.36 +0.7
3,282,885 + NOLOHH_16700 0.70 -0.7
3,283,668 + -0.7

Or see this region's nucleotide sequence