Strain Fitness in Escherichia coli ECOR27 around NOLOHH_14710

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaL and ubiG are separated by 140 nucleotidesubiG and gyrA are separated by 146 nucleotides NOLOHH_14705: yfaL - AIDA-I family autotransporter adhesin YfaL/EhaC, at 2,869,209 to 2,872,943 yfaL NOLOHH_14710: ubiG - bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG, at 2,873,084 to 2,873,806 ubiG NOLOHH_14715: gyrA - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 2,873,953 to 2,876,580 gyrA Position (kb) 2873 2874Strain fitness (log2 ratio) -2 -1 0 1 2at 2872.106 kb on + strand, within yfaLat 2872.157 kb on - strand, within yfaLat 2872.176 kb on + strand, within yfaLat 2872.223 kb on + strand, within yfaLat 2872.409 kb on + strand, within yfaLat 2872.436 kb on + strand, within yfaLat 2872.449 kb on + strand, within yfaLat 2872.460 kb on + strand, within yfaLat 2872.619 kb on + strandat 2872.726 kb on + strandat 2872.784 kb on + strandat 2872.979 kb on + strandat 2873.013 kb on - strandat 2873.021 kb on + strandat 2873.022 kb on - strandat 2873.089 kb on + strandat 2873.089 kb on + strandat 2873.090 kb on - strandat 2873.090 kb on - strandat 2873.844 kb on - strandat 2873.844 kb on - strandat 2873.844 kb on - strandat 2873.846 kb on - strandat 2873.846 kb on - strandat 2873.846 kb on - strandat 2873.846 kb on - strandat 2873.846 kb on - strandat 2873.846 kb on - strandat 2873.866 kb on - strandat 2873.866 kb on - strandat 2873.874 kb on + strandat 2873.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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2,872,106 + yfaL NOLOHH_14705 0.78 -0.3
2,872,157 - yfaL NOLOHH_14705 0.79 -0.2
2,872,176 + yfaL NOLOHH_14705 0.79 +0.6
2,872,223 + yfaL NOLOHH_14705 0.81 -1.3
2,872,409 + yfaL NOLOHH_14705 0.86 -0.9
2,872,436 + yfaL NOLOHH_14705 0.86 +0.0
2,872,449 + yfaL NOLOHH_14705 0.87 -0.7
2,872,460 + yfaL NOLOHH_14705 0.87 +0.9
2,872,619 + -2.5
2,872,726 + +1.9
2,872,784 + +0.7
2,872,979 + +0.7
2,873,013 - -1.8
2,873,021 + +0.7
2,873,022 - +0.9
2,873,089 + +2.6
2,873,089 + -0.7
2,873,090 - +0.1
2,873,090 - -0.1
2,873,844 - -0.9
2,873,844 - -0.7
2,873,844 - -0.6
2,873,846 - -0.7
2,873,846 - +0.3
2,873,846 - -1.5
2,873,846 - -0.1
2,873,846 - +0.3
2,873,846 - +0.3
2,873,866 - -0.3
2,873,866 - -2.5
2,873,874 + -0.7
2,873,874 + +2.3

Or see this region's nucleotide sequence