Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tdcA and tdcB are separated by 98 nucleotides tdcB and tdcC are separated by 21 nucleotides
NOLOHH_10175: tdcA - transcriptional regulator TdcA, at 1,960,530 to 1,961,468
tdcA
NOLOHH_10180: tdcB - bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB, at 1,961,567 to 1,962,556
tdcB
NOLOHH_10185: tdcC - threonine/serine transporter TdcC, at 1,962,578 to 1,963,909
tdcC
Position (kb) 1961
1962
1963 Strain fitness (log2 ratio) -1
0
1 at 1960.586 kb on + strand at 1960.587 kb on - strand at 1960.799 kb on + strand, within tdcA at 1960.800 kb on - strand, within tdcA at 1960.863 kb on - strand, within tdcA at 1960.916 kb on + strand, within tdcA at 1960.917 kb on - strand, within tdcA at 1960.917 kb on - strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.920 kb on + strand, within tdcA at 1960.921 kb on - strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1960.990 kb on + strand, within tdcA at 1961.056 kb on + strand, within tdcA at 1961.135 kb on + strand, within tdcA at 1961.135 kb on + strand, within tdcA at 1961.136 kb on - strand, within tdcA at 1961.136 kb on - strand, within tdcA at 1961.162 kb on + strand, within tdcA at 1961.163 kb on - strand, within tdcA at 1961.165 kb on + strand, within tdcA at 1961.165 kb on + strand, within tdcA at 1961.166 kb on - strand, within tdcA at 1961.257 kb on + strand, within tdcA at 1961.310 kb on - strand, within tdcA at 1961.565 kb on + strand at 1961.670 kb on - strand, within tdcB at 1961.759 kb on - strand, within tdcB at 1961.870 kb on - strand, within tdcB at 1961.924 kb on + strand, within tdcB at 1962.190 kb on - strand, within tdcB at 1962.304 kb on - strand, within tdcB at 1962.308 kb on + strand, within tdcB at 1962.465 kb on - strand at 1962.466 kb on + strand at 1962.493 kb on + strand at 1962.508 kb on + strand at 1962.555 kb on - strand at 1962.577 kb on + strand at 1962.577 kb on + strand at 1962.583 kb on + strand at 1962.584 kb on - strand at 1962.592 kb on + strand at 1962.592 kb on + strand at 1962.592 kb on + strand at 1962.593 kb on - strand at 1962.654 kb on + strand at 1962.830 kb on - strand, within tdcC at 1962.887 kb on + strand, within tdcC at 1962.888 kb on - strand, within tdcC at 1962.888 kb on - strand, within tdcC at 1962.931 kb on + strand, within tdcC at 1962.931 kb on + strand, within tdcC at 1962.931 kb on + strand, within tdcC at 1962.940 kb on + strand, within tdcC at 1962.941 kb on - strand, within tdcC at 1963.073 kb on + strand, within tdcC at 1963.292 kb on + strand, within tdcC at 1963.292 kb on + strand, within tdcC at 1963.327 kb on + strand, within tdcC at 1963.328 kb on - strand, within tdcC at 1963.393 kb on + strand, within tdcC at 1963.393 kb on + strand, within tdcC at 1963.394 kb on - strand, within tdcC at 1963.448 kb on - strand, within tdcC at 1963.448 kb on - strand, within tdcC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 1,960,586 + +0.4 1,960,587 - +0.2 1,960,799 + tdcA NOLOHH_10175 0.29 +0.0 1,960,800 - tdcA NOLOHH_10175 0.29 -0.3 1,960,863 - tdcA NOLOHH_10175 0.35 -1.2 1,960,916 + tdcA NOLOHH_10175 0.41 +0.2 1,960,917 - tdcA NOLOHH_10175 0.41 +0.8 1,960,917 - tdcA NOLOHH_10175 0.41 -1.3 1,960,920 + tdcA NOLOHH_10175 0.42 +0.7 1,960,920 + tdcA NOLOHH_10175 0.42 +1.3 1,960,920 + tdcA NOLOHH_10175 0.42 +1.0 1,960,920 + tdcA NOLOHH_10175 0.42 +0.0 1,960,921 - tdcA NOLOHH_10175 0.42 -1.6 1,960,990 + tdcA NOLOHH_10175 0.49 +1.0 1,960,990 + tdcA NOLOHH_10175 0.49 -0.2 1,960,990 + tdcA NOLOHH_10175 0.49 -1.0 1,960,990 + tdcA NOLOHH_10175 0.49 -1.0 1,961,056 + tdcA NOLOHH_10175 0.56 -0.6 1,961,135 + tdcA NOLOHH_10175 0.64 +1.4 1,961,135 + tdcA NOLOHH_10175 0.64 +0.4 1,961,136 - tdcA NOLOHH_10175 0.65 +0.4 1,961,136 - tdcA NOLOHH_10175 0.65 -0.9 1,961,162 + tdcA NOLOHH_10175 0.67 -1.0 1,961,163 - tdcA NOLOHH_10175 0.67 -1.4 1,961,165 + tdcA NOLOHH_10175 0.68 +0.4 1,961,165 + tdcA NOLOHH_10175 0.68 +0.4 1,961,166 - tdcA NOLOHH_10175 0.68 -1.3 1,961,257 + tdcA NOLOHH_10175 0.77 -1.2 1,961,310 - tdcA NOLOHH_10175 0.83 +0.5 1,961,565 + +1.4 1,961,670 - tdcB NOLOHH_10180 0.10 -0.3 1,961,759 - tdcB NOLOHH_10180 0.19 +0.7 1,961,870 - tdcB NOLOHH_10180 0.31 -0.4 1,961,924 + tdcB NOLOHH_10180 0.36 +0.6 1,962,190 - tdcB NOLOHH_10180 0.63 -0.8 1,962,304 - tdcB NOLOHH_10180 0.74 +0.1 1,962,308 + tdcB NOLOHH_10180 0.75 +0.6 1,962,465 - -0.6 1,962,466 + +0.0 1,962,493 + +0.4 1,962,508 + -1.0 1,962,555 - +1.0 1,962,577 + -1.4 1,962,577 + -0.9 1,962,583 + +0.6 1,962,584 - -0.1 1,962,592 + +1.4 1,962,592 + -0.1 1,962,592 + +1.7 1,962,593 - -0.3 1,962,654 + -0.5 1,962,830 - tdcC NOLOHH_10185 0.19 -0.5 1,962,887 + tdcC NOLOHH_10185 0.23 -0.2 1,962,888 - tdcC NOLOHH_10185 0.23 -0.3 1,962,888 - tdcC NOLOHH_10185 0.23 -1.4 1,962,931 + tdcC NOLOHH_10185 0.27 -0.3 1,962,931 + tdcC NOLOHH_10185 0.27 -0.6 1,962,931 + tdcC NOLOHH_10185 0.27 -0.0 1,962,940 + tdcC NOLOHH_10185 0.27 -0.0 1,962,941 - tdcC NOLOHH_10185 0.27 +0.4 1,963,073 + tdcC NOLOHH_10185 0.37 +0.0 1,963,292 + tdcC NOLOHH_10185 0.54 -0.3 1,963,292 + tdcC NOLOHH_10185 0.54 +0.4 1,963,327 + tdcC NOLOHH_10185 0.56 +1.4 1,963,328 - tdcC NOLOHH_10185 0.56 +1.2 1,963,393 + tdcC NOLOHH_10185 0.61 +0.3 1,963,393 + tdcC NOLOHH_10185 0.61 -0.3 1,963,394 - tdcC NOLOHH_10185 0.61 +0.2 1,963,448 - tdcC NOLOHH_10185 0.65 +0.1 1,963,448 - tdcC NOLOHH_10185 0.65 +0.7
Or see this region's nucleotide sequence