Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09900

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargG and fMet_trna are separated by 347 nucleotidesfMet_trna and rimP are separated by 206 nucleotidesrimP and nusA are separated by 27 nucleotides NOLOHH_09890: argG - argininosuccinate synthase, at 1,905,405 to 1,906,748 argG NOLOHH_09895: fMet_trna - tRNA-fMet(cat), at 1,907,096 to 1,907,172 _trna NOLOHH_09900: rimP - ribosome maturation factor RimP, at 1,907,379 to 1,907,831 rimP NOLOHH_09905: nusA - Transcription termination/antitermination protein NusA, at 1,907,859 to 1,909,346 nusA Position (kb) 1907 1908Strain fitness (log2 ratio) -2 -1 0 1at 1906.416 kb on - strand, within argGat 1906.453 kb on + strand, within argGat 1906.454 kb on - strand, within argGat 1906.476 kb on - strand, within argGat 1906.506 kb on - strand, within argGat 1906.562 kb on - strand, within argGat 1906.591 kb on + strand, within argGat 1906.592 kb on - strand, within argGat 1906.592 kb on - strand, within argGat 1906.626 kb on - strandat 1906.626 kb on - strandat 1906.626 kb on - strandat 1906.626 kb on - strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.627 kb on + strandat 1906.628 kb on - strandat 1906.628 kb on - strandat 1906.628 kb on - strandat 1906.628 kb on - strandat 1906.710 kb on - strandat 1906.710 kb on - strandat 1906.710 kb on - strandat 1906.710 kb on - strandat 1906.753 kb on + strandat 1906.765 kb on + strandat 1906.765 kb on + strandat 1906.766 kb on - strandat 1906.766 kb on - strandat 1906.769 kb on + strandat 1906.769 kb on + strandat 1906.770 kb on - strandat 1906.886 kb on - strandat 1906.947 kb on - strandat 1907.000 kb on + strandat 1907.001 kb on - strandat 1907.049 kb on + strandat 1907.200 kb on + strandat 1907.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,906,416 - argG NOLOHH_09890 0.75 -1.6
1,906,453 + argG NOLOHH_09890 0.78 +0.2
1,906,454 - argG NOLOHH_09890 0.78 -0.3
1,906,476 - argG NOLOHH_09890 0.80 -0.8
1,906,506 - argG NOLOHH_09890 0.82 -0.1
1,906,562 - argG NOLOHH_09890 0.86 -0.5
1,906,591 + argG NOLOHH_09890 0.88 +0.6
1,906,592 - argG NOLOHH_09890 0.88 -0.3
1,906,592 - argG NOLOHH_09890 0.88 -0.1
1,906,626 - +0.4
1,906,626 - -0.0
1,906,626 - +0.2
1,906,626 - -0.5
1,906,627 + -1.2
1,906,627 + -0.1
1,906,627 + -0.4
1,906,627 + -2.2
1,906,627 + -0.2
1,906,627 + -0.3
1,906,627 + +0.7
1,906,627 + -0.9
1,906,628 - +0.4
1,906,628 - -0.0
1,906,628 - -0.4
1,906,628 - +0.4
1,906,710 - -0.2
1,906,710 - +1.0
1,906,710 - -1.0
1,906,710 - -0.5
1,906,753 + +0.4
1,906,765 + +0.9
1,906,765 + +0.0
1,906,766 - +0.7
1,906,766 - +0.5
1,906,769 + -0.5
1,906,769 + -1.2
1,906,770 - -0.6
1,906,886 - +0.0
1,906,947 - +1.4
1,907,000 + +0.1
1,907,001 - +0.3
1,907,049 + +0.4
1,907,200 + -1.2
1,907,829 + +0.4

Or see this region's nucleotide sequence