Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09745

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoN and lptB are separated by 47 nucleotideslptB and lptA are separated by 6 nucleotideslptA and lptC overlap by 32 nucleotides NOLOHH_09740: rpoN - RNA polymerase factor sigma-54, at 1,879,381 to 1,880,814 rpoN NOLOHH_09745: lptB - LPS export ABC transporter ATP-binding protein, at 1,880,862 to 1,881,587 lptB NOLOHH_09750: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 1,881,594 to 1,882,151 lptA NOLOHH_09755: lptC - LPS export ABC transporter periplasmic protein LptC, at 1,882,120 to 1,882,695 lptC Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -1 0 1at 1880.837 kb on + strandat 1880.856 kb on - strandat 1880.861 kb on - strandat 1881.600 kb on - strandat 1882.196 kb on - strand, within lptCat 1882.196 kb on - strand, within lptCat 1882.228 kb on - strand, within lptCat 1882.242 kb on - strand, within lptCat 1882.242 kb on - strand, within lptCat 1882.267 kb on - strand, within lptCat 1882.267 kb on - strand, within lptCat 1882.267 kb on - strand, within lptC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,880,837 + +0.4
1,880,856 - -0.7
1,880,861 - +1.0
1,881,600 - +1.4
1,882,196 - lptC NOLOHH_09755 0.13 +0.4
1,882,196 - lptC NOLOHH_09755 0.13 -1.3
1,882,228 - lptC NOLOHH_09755 0.19 -1.2
1,882,242 - lptC NOLOHH_09755 0.21 -1.0
1,882,242 - lptC NOLOHH_09755 0.21 -0.2
1,882,267 - lptC NOLOHH_09755 0.26 -0.2
1,882,267 - lptC NOLOHH_09755 0.26 +0.2
1,882,267 - lptC NOLOHH_09755 0.26 -0.1

Or see this region's nucleotide sequence