Strain Fitness in Escherichia coli ECOR27 around NOLOHH_09220

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsQ and rplN are separated by 164 nucleotidesrplN and rplX are separated by 10 nucleotidesrplX and rplE are separated by 14 nucleotidesrplE and rpsN are separated by 14 nucleotidesrpsN and rpsH are separated by 33 nucleotidesrpsH and rplF are separated by 12 nucleotides NOLOHH_09205: rpsQ - 30S ribosomal protein S17, at 1,784,150 to 1,784,404 rpsQ NOLOHH_09210: rplN - 50S ribosomal protein L14, at 1,784,569 to 1,784,940 rplN NOLOHH_09215: rplX - 50S ribosomal protein L24, at 1,784,951 to 1,785,265 rplX NOLOHH_09220: rplE - 50S ribosomal protein L5, at 1,785,280 to 1,785,819 rplE NOLOHH_09225: rpsN - 30S ribosomal protein S14, at 1,785,834 to 1,786,139 rpsN NOLOHH_09230: rpsH - 30S ribosomal protein S8, at 1,786,173 to 1,786,565 rpsH NOLOHH_09235: rplF - 50S ribosomal protein L6, at 1,786,578 to 1,787,111 rplF Position (kb) 1785 1786Strain fitness (log2 ratio) -1 0 1at 1784.403 kb on - strandat 1784.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,784,403 - -0.6
1,784,410 + -1.1

Or see this region's nucleotide sequence