Strain Fitness in Escherichia coli ECOR27 around NOLOHH_08515

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsY and ftsE are separated by 2 nucleotidesftsE and ftsX overlap by 8 nucleotidesftsX and rpoH are separated by 244 nucleotides NOLOHH_08505: ftsY - signal recognition particle-docking protein FtsY, at 1,642,993 to 1,644,486 ftsY NOLOHH_08510: ftsE - cell division ATP-binding protein FtsE, at 1,644,489 to 1,645,157 ftsE NOLOHH_08515: ftsX - permease-like cell division protein FtsX, at 1,645,150 to 1,646,208 ftsX NOLOHH_08520: rpoH - RNA polymerase sigma factor RpoH, at 1,646,453 to 1,647,307 rpoH Position (kb) 1645 1646 1647Strain fitness (log2 ratio) -1 0 1 2 3at 1644.485 kb on - strandat 1644.560 kb on + strand, within ftsEat 1644.757 kb on + strand, within ftsEat 1644.757 kb on + strand, within ftsEat 1644.777 kb on + strand, within ftsEat 1645.018 kb on + strand, within ftsEat 1645.018 kb on + strand, within ftsEat 1645.376 kb on + strand, within ftsXat 1645.426 kb on - strand, within ftsXat 1645.432 kb on + strand, within ftsXat 1645.716 kb on + strand, within ftsXat 1645.731 kb on + strand, within ftsXat 1646.033 kb on + strand, within ftsXat 1646.186 kb on + strandat 1646.197 kb on - strandat 1646.210 kb on - strandat 1646.210 kb on - strandat 1646.222 kb on + strandat 1646.223 kb on - strandat 1646.223 kb on - strandat 1646.223 kb on - strandat 1646.223 kb on - strandat 1646.281 kb on + strandat 1646.281 kb on + strandat 1646.292 kb on + strandat 1646.293 kb on - strandat 1646.293 kb on - strandat 1646.433 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,644,485 - +0.6
1,644,560 + ftsE NOLOHH_08510 0.11 -0.5
1,644,757 + ftsE NOLOHH_08510 0.40 +2.5
1,644,757 + ftsE NOLOHH_08510 0.40 -0.5
1,644,777 + ftsE NOLOHH_08510 0.43 -0.5
1,645,018 + ftsE NOLOHH_08510 0.79 +1.8
1,645,018 + ftsE NOLOHH_08510 0.79 +0.5
1,645,376 + ftsX NOLOHH_08515 0.21 -1.5
1,645,426 - ftsX NOLOHH_08515 0.26 +1.5
1,645,432 + ftsX NOLOHH_08515 0.27 -0.3
1,645,716 + ftsX NOLOHH_08515 0.53 +3.3
1,645,731 + ftsX NOLOHH_08515 0.55 +1.5
1,646,033 + ftsX NOLOHH_08515 0.83 -0.1
1,646,186 + -0.1
1,646,197 - +0.7
1,646,210 - -0.2
1,646,210 - -0.5
1,646,222 + +0.3
1,646,223 - -0.2
1,646,223 - +1.3
1,646,223 - +0.8
1,646,223 - +0.5
1,646,281 + -0.5
1,646,281 + -0.7
1,646,292 + -1.5
1,646,293 - +0.5
1,646,293 - -0.5
1,646,433 + +0.3

Or see this region's nucleotide sequence