Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05590

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplA and rplK are separated by 3 nucleotidesrplK and nusG are separated by 158 nucleotidesnusG and secE are separated by 1 nucleotides NOLOHH_05585: rplA - 50S ribosomal protein L1, at 1,041,028 to 1,041,732 rplA NOLOHH_05590: rplK - 50S ribosomal protein L11, at 1,041,736 to 1,042,164 rplK NOLOHH_05595: nusG - transcription termination/antitermination protein NusG, at 1,042,323 to 1,042,868 nusG NOLOHH_05600: secE - preprotein translocase subunit SecE, at 1,042,870 to 1,043,253 secE Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1at 1040.897 kb on - strandat 1040.897 kb on - strandat 1040.897 kb on - strandat 1040.897 kb on - strandat 1040.901 kb on - strandat 1040.901 kb on - strandat 1040.905 kb on - strandat 1040.905 kb on - strandat 1040.905 kb on - strandat 1040.905 kb on - strandat 1040.905 kb on - strandat 1040.962 kb on - strandat 1040.962 kb on - strandat 1040.962 kb on - strandat 1040.962 kb on - strandat 1040.982 kb on - strandat 1040.982 kb on - strandat 1040.982 kb on - strandat 1041.021 kb on - strandat 1042.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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1,040,897 - -0.2
1,040,897 - -1.3
1,040,897 - -0.5
1,040,897 - -0.9
1,040,901 - -0.1
1,040,901 - -1.5
1,040,905 - -1.6
1,040,905 - -1.5
1,040,905 - -0.5
1,040,905 - -0.7
1,040,905 - -1.1
1,040,962 - -1.1
1,040,962 - -0.8
1,040,962 - +0.5
1,040,962 - -2.2
1,040,982 - +0.5
1,040,982 - +0.5
1,040,982 - -0.1
1,041,021 - -1.9
1,042,324 + +1.0

Or see this region's nucleotide sequence