Strain Fitness in Escherichia coli ECOR27 around NOLOHH_03285

Experiment: Bas67

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcarA and dapB are separated by 455 nucleotidesdapB and rihC are separated by 166 nucleotides NOLOHH_03275: carA - carbamoyl phosphate synthase small subunit, at 576,926 to 578,074 carA NOLOHH_03285: dapB - 4-hydroxy-tetrahydrodipicolinate reductase, at 578,530 to 579,351 dapB NOLOHH_03290: rihC - ribonucleoside hydrolase RihC, at 579,518 to 580,432 rihC Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1 2at 577.572 kb on + strand, within carAat 577.572 kb on + strand, within carAat 577.573 kb on - strand, within carAat 577.573 kb on - strand, within carAat 577.713 kb on - strand, within carAat 577.759 kb on + strand, within carAat 577.760 kb on - strand, within carAat 577.792 kb on + strand, within carAat 577.796 kb on - strand, within carAat 577.850 kb on + strand, within carAat 577.851 kb on - strand, within carAat 577.851 kb on - strand, within carAat 577.898 kb on - strand, within carAat 577.905 kb on + strand, within carAat 577.909 kb on + strand, within carAat 577.909 kb on + strand, within carAat 577.909 kb on + strand, within carAat 577.909 kb on + strand, within carAat 577.909 kb on + strand, within carAat 577.909 kb on + strand, within carAat 577.910 kb on - strand, within carAat 577.910 kb on - strand, within carAat 577.910 kb on - strand, within carAat 577.910 kb on - strand, within carAat 577.975 kb on + strandat 577.975 kb on + strandat 577.975 kb on + strandat 577.975 kb on + strandat 578.015 kb on + strandat 578.057 kb on + strandat 578.068 kb on + strandat 578.069 kb on - strandat 578.134 kb on - strandat 578.212 kb on + strandat 578.265 kb on + strandat 579.378 kb on - strandat 579.432 kb on + strandat 579.437 kb on - strandat 579.519 kb on + strandat 579.519 kb on + strandat 579.590 kb on + strandat 579.590 kb on + strandat 579.590 kb on + strandat 579.591 kb on - strandat 579.695 kb on + strand, within rihCat 579.757 kb on + strand, within rihCat 579.778 kb on + strand, within rihCat 579.826 kb on + strand, within rihCat 579.834 kb on + strand, within rihCat 579.848 kb on + strand, within rihCat 579.848 kb on + strand, within rihCat 579.959 kb on - strand, within rihCat 580.008 kb on + strand, within rihCat 580.008 kb on + strand, within rihCat 580.009 kb on - strand, within rihCat 580.009 kb on - strand, within rihCat 580.297 kb on + strand, within rihC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas67
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577,572 + carA NOLOHH_03275 0.56 +0.4
577,572 + carA NOLOHH_03275 0.56 -0.8
577,573 - carA NOLOHH_03275 0.56 +0.1
577,573 - carA NOLOHH_03275 0.56 +0.7
577,713 - carA NOLOHH_03275 0.68 -0.1
577,759 + carA NOLOHH_03275 0.72 +2.2
577,760 - carA NOLOHH_03275 0.73 +0.1
577,792 + carA NOLOHH_03275 0.75 +0.4
577,796 - carA NOLOHH_03275 0.76 +0.1
577,850 + carA NOLOHH_03275 0.80 -1.3
577,851 - carA NOLOHH_03275 0.81 -0.3
577,851 - carA NOLOHH_03275 0.81 +0.4
577,898 - carA NOLOHH_03275 0.85 +1.1
577,905 + carA NOLOHH_03275 0.85 -0.3
577,909 + carA NOLOHH_03275 0.86 -1.4
577,909 + carA NOLOHH_03275 0.86 -2.2
577,909 + carA NOLOHH_03275 0.86 -0.9
577,909 + carA NOLOHH_03275 0.86 -0.2
577,909 + carA NOLOHH_03275 0.86 -0.2
577,909 + carA NOLOHH_03275 0.86 +1.6
577,910 - carA NOLOHH_03275 0.86 -0.9
577,910 - carA NOLOHH_03275 0.86 -0.3
577,910 - carA NOLOHH_03275 0.86 -0.4
577,910 - carA NOLOHH_03275 0.86 +0.4
577,975 + +0.3
577,975 + +0.4
577,975 + +1.1
577,975 + +1.2
578,015 + +1.2
578,057 + -0.6
578,068 + -0.4
578,069 - +0.7
578,134 - +0.3
578,212 + -0.3
578,265 + -0.3
579,378 - -0.4
579,432 + -0.0
579,437 - -1.1
579,519 + -1.6
579,519 + +0.1
579,590 + +0.2
579,590 + -0.2
579,590 + +0.6
579,591 - -0.6
579,695 + rihC NOLOHH_03290 0.19 +0.1
579,757 + rihC NOLOHH_03290 0.26 +1.0
579,778 + rihC NOLOHH_03290 0.28 -0.3
579,826 + rihC NOLOHH_03290 0.34 +1.1
579,834 + rihC NOLOHH_03290 0.35 +0.9
579,848 + rihC NOLOHH_03290 0.36 +0.0
579,848 + rihC NOLOHH_03290 0.36 -0.8
579,959 - rihC NOLOHH_03290 0.48 +0.8
580,008 + rihC NOLOHH_03290 0.54 +0.4
580,008 + rihC NOLOHH_03290 0.54 -1.2
580,009 - rihC NOLOHH_03290 0.54 -0.3
580,009 - rihC NOLOHH_03290 0.54 +0.1
580,297 + rihC NOLOHH_03290 0.85 +0.4

Or see this region's nucleotide sequence