Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadE and ivy are separated by 42 nucleotides ivy and yafV are separated by 180 nucleotides yafV and tnp-ISAs1 are separated by 41 nucleotides
NOLOHH_02155: fadE - acyl-CoA dehydrogenase FadE, at 335,134 to 337,578
fadE
NOLOHH_02160: ivy - Ivy family C-type lysozyme inhibitor, at 337,621 to 338,067
ivy
NOLOHH_02165: yafV - 2-oxoglutaramate amidase, at 338,248 to 339,018
yafV
NOLOHH_02170: tnp-ISAs1 - ISAs1 family transposase, at 339,060 to 340,103
tnp-ISAs1
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.270 kb on + strand, within fadE at 337.290 kb on + strand, within fadE at 337.363 kb on - strand at 337.576 kb on + strand at 337.576 kb on + strand at 337.577 kb on - strand at 337.622 kb on + strand at 337.632 kb on + strand at 337.785 kb on + strand, within ivy at 337.812 kb on + strand, within ivy at 337.859 kb on + strand, within ivy at 337.860 kb on - strand, within ivy at 337.896 kb on + strand, within ivy at 337.898 kb on + strand, within ivy at 337.898 kb on + strand, within ivy at 337.899 kb on - strand, within ivy at 337.899 kb on - strand, within ivy at 337.899 kb on - strand, within ivy at 337.899 kb on - strand, within ivy at 337.903 kb on - strand, within ivy at 337.933 kb on - strand, within ivy at 337.933 kb on - strand, within ivy at 337.933 kb on - strand, within ivy at 337.942 kb on + strand, within ivy at 337.942 kb on + strand, within ivy at 337.943 kb on - strand, within ivy at 337.943 kb on - strand, within ivy at 337.943 kb on - strand, within ivy at 337.953 kb on + strand, within ivy at 337.954 kb on - strand, within ivy at 337.954 kb on - strand, within ivy at 337.954 kb on - strand, within ivy at 338.062 kb on - strand at 338.097 kb on + strand at 338.097 kb on + strand at 338.097 kb on + strand at 338.098 kb on - strand at 338.098 kb on - strand at 338.098 kb on - strand at 338.101 kb on - strand at 338.108 kb on + strand at 338.108 kb on + strand at 338.108 kb on + strand at 338.109 kb on - strand at 338.109 kb on - strand at 338.129 kb on + strand at 338.129 kb on + strand at 338.130 kb on - strand at 338.145 kb on + strand at 338.185 kb on + strand at 338.185 kb on + strand at 338.209 kb on + strand at 338.209 kb on + strand at 338.216 kb on - strand at 338.232 kb on - strand at 338.243 kb on - strand at 338.243 kb on - strand at 338.243 kb on - strand at 338.265 kb on + strand at 338.340 kb on + strand, within yafV at 338.340 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.432 kb on + strand, within yafV at 338.433 kb on - strand, within yafV at 338.433 kb on - strand, within yafV at 338.433 kb on - strand, within yafV at 338.452 kb on - strand, within yafV at 338.496 kb on - strand, within yafV at 338.553 kb on - strand, within yafV at 338.560 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.600 kb on + strand, within yafV at 338.601 kb on - strand, within yafV at 338.601 kb on - strand, within yafV at 338.601 kb on - strand, within yafV at 338.606 kb on - strand, within yafV at 338.607 kb on + strand, within yafV at 338.608 kb on - strand, within yafV at 338.608 kb on - strand, within yafV at 338.671 kb on + strand, within yafV at 338.678 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.728 kb on + strand, within yafV at 338.729 kb on - strand, within yafV at 338.729 kb on - strand, within yafV at 338.806 kb on + strand, within yafV at 338.807 kb on - strand, within yafV at 338.807 kb on - strand, within yafV at 338.878 kb on - strand, within yafV at 338.967 kb on + strand at 338.967 kb on + strand at 339.007 kb on - strand at 339.007 kb on - strand at 339.007 kb on - strand at 339.034 kb on - strand at 339.129 kb on - strand at 339.129 kb on - strand at 339.129 kb on - strand at 339.347 kb on - strand, within tnp-ISAs1
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 337,270 + fadE NOLOHH_02155 0.87 -0.0 337,290 + fadE NOLOHH_02155 0.88 -0.0 337,363 - +1.0 337,576 + +1.1 337,576 + -0.7 337,577 - -1.2 337,622 + +0.0 337,632 + +0.4 337,785 + ivy NOLOHH_02160 0.37 -1.0 337,812 + ivy NOLOHH_02160 0.43 +0.7 337,859 + ivy NOLOHH_02160 0.53 -0.4 337,860 - ivy NOLOHH_02160 0.53 +0.3 337,896 + ivy NOLOHH_02160 0.62 +0.4 337,898 + ivy NOLOHH_02160 0.62 -1.2 337,898 + ivy NOLOHH_02160 0.62 -0.0 337,899 - ivy NOLOHH_02160 0.62 -0.6 337,899 - ivy NOLOHH_02160 0.62 -1.2 337,899 - ivy NOLOHH_02160 0.62 +0.1 337,899 - ivy NOLOHH_02160 0.62 -0.6 337,903 - ivy NOLOHH_02160 0.63 +0.1 337,933 - ivy NOLOHH_02160 0.70 -0.4 337,933 - ivy NOLOHH_02160 0.70 -1.2 337,933 - ivy NOLOHH_02160 0.70 -2.0 337,942 + ivy NOLOHH_02160 0.72 +0.9 337,942 + ivy NOLOHH_02160 0.72 +0.6 337,943 - ivy NOLOHH_02160 0.72 -0.4 337,943 - ivy NOLOHH_02160 0.72 -0.4 337,943 - ivy NOLOHH_02160 0.72 +0.1 337,953 + ivy NOLOHH_02160 0.74 +0.4 337,954 - ivy NOLOHH_02160 0.74 +0.4 337,954 - ivy NOLOHH_02160 0.74 -1.1 337,954 - ivy NOLOHH_02160 0.74 +0.4 338,062 - -0.6 338,097 + -2.1 338,097 + +0.0 338,097 + +0.4 338,098 - -0.2 338,098 - -0.2 338,098 - +2.4 338,101 - -1.2 338,108 + -0.4 338,108 + +1.4 338,108 + +0.9 338,109 - -0.4 338,109 - -0.6 338,129 + +0.2 338,129 + +0.4 338,130 - -0.0 338,145 + +0.5 338,185 + +0.4 338,185 + +0.4 338,209 + +0.8 338,209 + -2.0 338,216 - -0.3 338,232 - -0.3 338,243 - -0.2 338,243 - -0.0 338,243 - +0.4 338,265 + -0.3 338,340 + yafV NOLOHH_02165 0.12 +0.2 338,340 + yafV NOLOHH_02165 0.12 -0.7 338,432 + yafV NOLOHH_02165 0.24 +0.4 338,432 + yafV NOLOHH_02165 0.24 +0.7 338,432 + yafV NOLOHH_02165 0.24 +0.5 338,432 + yafV NOLOHH_02165 0.24 +1.0 338,432 + yafV NOLOHH_02165 0.24 +1.0 338,433 - yafV NOLOHH_02165 0.24 -1.2 338,433 - yafV NOLOHH_02165 0.24 +0.1 338,433 - yafV NOLOHH_02165 0.24 +0.2 338,452 - yafV NOLOHH_02165 0.26 +0.6 338,496 - yafV NOLOHH_02165 0.32 +0.5 338,553 - yafV NOLOHH_02165 0.40 +0.4 338,560 + yafV NOLOHH_02165 0.40 +0.0 338,600 + yafV NOLOHH_02165 0.46 +0.0 338,600 + yafV NOLOHH_02165 0.46 -0.6 338,600 + yafV NOLOHH_02165 0.46 +0.9 338,600 + yafV NOLOHH_02165 0.46 -0.4 338,600 + yafV NOLOHH_02165 0.46 -0.6 338,600 + yafV NOLOHH_02165 0.46 -2.4 338,601 - yafV NOLOHH_02165 0.46 -0.2 338,601 - yafV NOLOHH_02165 0.46 -1.4 338,601 - yafV NOLOHH_02165 0.46 -0.9 338,606 - yafV NOLOHH_02165 0.46 -1.2 338,607 + yafV NOLOHH_02165 0.47 -0.3 338,608 - yafV NOLOHH_02165 0.47 -0.6 338,608 - yafV NOLOHH_02165 0.47 -0.6 338,671 + yafV NOLOHH_02165 0.55 -0.3 338,678 + yafV NOLOHH_02165 0.56 -0.6 338,728 + yafV NOLOHH_02165 0.62 +0.4 338,728 + yafV NOLOHH_02165 0.62 +1.3 338,728 + yafV NOLOHH_02165 0.62 -0.9 338,728 + yafV NOLOHH_02165 0.62 -0.0 338,729 - yafV NOLOHH_02165 0.62 +2.7 338,729 - yafV NOLOHH_02165 0.62 +0.6 338,806 + yafV NOLOHH_02165 0.72 +0.2 338,807 - yafV NOLOHH_02165 0.73 +1.2 338,807 - yafV NOLOHH_02165 0.73 -0.5 338,878 - yafV NOLOHH_02165 0.82 -2.2 338,967 + +0.7 338,967 + +0.2 339,007 - +0.8 339,007 - +0.0 339,007 - -1.0 339,034 - -2.0 339,129 - -2.0 339,129 - +0.3 339,129 - +0.4 339,347 - tnp-ISAs1 NOLOHH_02170 0.27 +0.9
Or see this region's nucleotide sequence