Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiI and xseB are separated by 205 nucleotides xseB and ispA overlap by 1 nucleotides ispA and dxs are separated by 24 nucleotides
NOLOHH_01355: thiI - tRNA sulfurtransferase, at 163,209 to 164,657
thiI
NOLOHH_01360: xseB - exodeoxyribonuclease VII small subunit, at 164,863 to 165,105
xseB
NOLOHH_01365: ispA - (2E,6E)-farnesyl diphosphate synthase, at 165,105 to 166,004
ispA
NOLOHH_01370: dxs - 1-deoxy-D-xylulose-5-phosphate synthase, at 166,029 to 167,891
dxs
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.252 kb on + strand, within thiI at 164.253 kb on - strand, within thiI at 164.278 kb on + strand, within thiI at 164.433 kb on - strand, within thiI at 164.549 kb on - strand at 164.557 kb on - strand at 164.590 kb on - strand at 164.592 kb on - strand at 164.648 kb on + strand at 164.684 kb on + strand at 164.695 kb on + strand at 164.695 kb on + strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.708 kb on - strand at 164.747 kb on + strand at 164.748 kb on - strand at 164.749 kb on + strand at 164.750 kb on - strand at 164.750 kb on - strand at 164.756 kb on - strand at 164.783 kb on + strand at 164.784 kb on - strand at 164.797 kb on - strand at 164.797 kb on - strand at 164.803 kb on + strand at 165.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 164,252 + thiI NOLOHH_01355 0.72 -1.2 164,253 - thiI NOLOHH_01355 0.72 +0.7 164,278 + thiI NOLOHH_01355 0.74 -1.6 164,433 - thiI NOLOHH_01355 0.84 +1.3 164,549 - +0.1 164,557 - -0.5 164,590 - +0.2 164,592 - +0.6 164,648 + +2.4 164,684 + -0.6 164,695 + +1.4 164,695 + +0.1 164,696 - +2.0 164,696 - +1.6 164,696 - -0.3 164,696 - -1.0 164,696 - -0.2 164,696 - -0.4 164,696 - +0.2 164,708 - +0.1 164,747 + +0.7 164,748 - +1.4 164,749 + +0.6 164,750 - -1.8 164,750 - -0.3 164,756 - +0.4 164,783 + -0.2 164,784 - +0.0 164,797 - +0.6 164,797 - +0.1 164,803 + +0.3 165,087 + +0.4
Or see this region's nucleotide sequence