Experiment: Bas67
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lon_P403L and clpX are separated by 187 nucleotides clpX and clpP are separated by 125 nucleotides clpP and tig are separated by 245 nucleotides
NOLOHH_01255: lon_P403L - Lon protease, at 142,691 to 145,045
_P403L
NOLOHH_01265: clpX - ATP-dependent protease ATP-binding subunit ClpX, at 145,233 to 146,507
clpX
NOLOHH_01270: clpP - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 146,633 to 147,256
clpP
NOLOHH_01275: tig - trigger factor, at 147,502 to 148,800
tig
Position (kb) 145
146
147 Strain fitness (log2 ratio) -1
0
1
2 at 144.338 kb on - strand, within lon_P403L at 144.360 kb on + strand, within lon_P403L at 144.361 kb on - strand, within lon_P403L at 144.361 kb on - strand, within lon_P403L at 144.364 kb on - strand, within lon_P403L at 144.462 kb on + strand, within lon_P403L at 144.529 kb on + strand, within lon_P403L at 144.530 kb on - strand, within lon_P403L at 144.530 kb on - strand, within lon_P403L at 144.530 kb on - strand, within lon_P403L at 144.575 kb on - strand, within lon_P403L at 144.700 kb on - strand, within lon_P403L at 144.748 kb on + strand, within lon_P403L at 144.818 kb on - strand at 144.852 kb on - strand at 144.852 kb on - strand at 144.959 kb on + strand at 144.960 kb on - strand at 145.058 kb on + strand at 145.059 kb on - strand at 145.063 kb on + strand at 145.110 kb on + strand at 145.110 kb on + strand at 145.111 kb on - strand at 145.111 kb on - strand at 145.120 kb on + strand at 145.120 kb on + strand at 145.120 kb on + strand at 145.120 kb on + strand at 145.121 kb on - strand at 145.121 kb on - strand at 145.121 kb on - strand at 145.121 kb on - strand at 145.121 kb on - strand at 145.128 kb on + strand at 145.128 kb on + strand at 145.128 kb on + strand at 145.128 kb on + strand at 145.128 kb on + strand at 145.128 kb on + strand at 145.129 kb on - strand at 145.129 kb on - strand at 145.131 kb on - strand at 145.213 kb on - strand at 145.270 kb on + strand at 146.231 kb on - strand, within clpX at 146.380 kb on - strand at 146.405 kb on - strand at 146.606 kb on + strand at 146.607 kb on - strand at 146.607 kb on - strand at 146.607 kb on - strand at 146.607 kb on - strand at 146.607 kb on - strand at 146.609 kb on - strand at 146.638 kb on + strand at 146.638 kb on + strand at 146.671 kb on - strand at 146.733 kb on - strand, within clpP at 146.759 kb on - strand, within clpP at 146.888 kb on - strand, within clpP at 146.985 kb on + strand, within clpP at 146.986 kb on - strand, within clpP at 146.990 kb on - strand, within clpP at 147.026 kb on - strand, within clpP at 147.037 kb on - strand, within clpP at 147.037 kb on - strand, within clpP at 147.037 kb on - strand, within clpP at 147.041 kb on - strand, within clpP at 147.142 kb on + strand, within clpP at 147.143 kb on - strand, within clpP at 147.302 kb on - strand at 147.302 kb on - strand at 147.302 kb on - strand at 147.302 kb on - strand at 147.302 kb on - strand at 147.325 kb on + strand at 147.326 kb on - strand at 147.338 kb on - strand at 147.356 kb on + strand at 147.357 kb on - strand at 147.367 kb on + strand at 147.384 kb on + strand at 147.482 kb on - strand at 147.490 kb on - strand at 147.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas67 remove 144,338 - lon_P403L NOLOHH_01255 0.70 -0.6 144,360 + lon_P403L NOLOHH_01255 0.71 -1.6 144,361 - lon_P403L NOLOHH_01255 0.71 +0.4 144,361 - lon_P403L NOLOHH_01255 0.71 -1.2 144,364 - lon_P403L NOLOHH_01255 0.71 -0.8 144,462 + lon_P403L NOLOHH_01255 0.75 -1.6 144,529 + lon_P403L NOLOHH_01255 0.78 -0.6 144,530 - lon_P403L NOLOHH_01255 0.78 +0.4 144,530 - lon_P403L NOLOHH_01255 0.78 -0.6 144,530 - lon_P403L NOLOHH_01255 0.78 +1.4 144,575 - lon_P403L NOLOHH_01255 0.80 -1.3 144,700 - lon_P403L NOLOHH_01255 0.85 +0.4 144,748 + lon_P403L NOLOHH_01255 0.87 +0.4 144,818 - +0.4 144,852 - +0.4 144,852 - -0.6 144,959 + +1.4 144,960 - +0.4 145,058 + -0.4 145,059 - +0.8 145,063 + -1.6 145,110 + +0.4 145,110 + -1.6 145,111 - -0.5 145,111 - +0.1 145,120 + +0.4 145,120 + +1.4 145,120 + -0.6 145,120 + +1.8 145,121 - -0.1 145,121 - -0.0 145,121 - -1.0 145,121 - +0.6 145,121 - -0.9 145,128 + -1.6 145,128 + -0.0 145,128 + -0.6 145,128 + -1.2 145,128 + -0.6 145,128 + +0.4 145,129 - -0.3 145,129 - +0.1 145,131 - +1.2 145,213 - -0.1 145,270 + -1.0 146,231 - clpX NOLOHH_01265 0.78 -0.6 146,380 - +0.4 146,405 - +0.4 146,606 + +0.4 146,607 - -0.7 146,607 - -1.2 146,607 - -1.6 146,607 - -0.2 146,607 - +2.7 146,609 - -1.1 146,638 + +0.4 146,638 + -1.2 146,671 - -0.6 146,733 - clpP NOLOHH_01270 0.16 +0.4 146,759 - clpP NOLOHH_01270 0.20 +1.4 146,888 - clpP NOLOHH_01270 0.41 +1.0 146,985 + clpP NOLOHH_01270 0.56 +0.4 146,986 - clpP NOLOHH_01270 0.57 +0.4 146,990 - clpP NOLOHH_01270 0.57 -0.6 147,026 - clpP NOLOHH_01270 0.63 +0.4 147,037 - clpP NOLOHH_01270 0.65 -0.6 147,037 - clpP NOLOHH_01270 0.65 +0.4 147,037 - clpP NOLOHH_01270 0.65 -1.2 147,041 - clpP NOLOHH_01270 0.65 +0.4 147,142 + clpP NOLOHH_01270 0.82 +1.4 147,143 - clpP NOLOHH_01270 0.82 -0.6 147,302 - -0.5 147,302 - -1.0 147,302 - -1.5 147,302 - -1.6 147,302 - -0.6 147,325 + -1.2 147,326 - -0.6 147,338 - -0.3 147,356 + +0.4 147,357 - -1.2 147,367 + +1.4 147,384 + +1.0 147,482 - -0.0 147,490 - +0.7 147,499 - +1.0
Or see this region's nucleotide sequence