Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oapA and tyrS are separated by 184 nucleotides tyrS and 16S_rrna are separated by 470 nucleotides
OKGIIK_15710: oapA - peptidase M23, at 3,430,743 to 3,432,188
oapA
OKGIIK_15715: tyrS - tyrosine--tRNA ligase, at 3,432,373 to 3,433,584
tyrS
OKGIIK_15720: 16S_rrna - 16S ribosomal RNA, at 3,434,055 to 3,435,599
_rrna
Position (kb)
3432
3433
3434 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3431.419 kb on + strand, within oapA at 3431.419 kb on + strand, within oapA at 3431.419 kb on + strand, within oapA at 3431.420 kb on - strand, within oapA at 3431.420 kb on - strand, within oapA at 3431.420 kb on - strand, within oapA at 3431.431 kb on + strand, within oapA at 3431.431 kb on + strand, within oapA at 3431.431 kb on + strand, within oapA at 3431.431 kb on + strand, within oapA at 3431.431 kb on + strand, within oapA at 3431.432 kb on - strand, within oapA at 3431.432 kb on - strand, within oapA at 3431.432 kb on - strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.485 kb on + strand, within oapA at 3431.486 kb on - strand, within oapA at 3431.486 kb on - strand, within oapA at 3431.551 kb on + strand, within oapA at 3431.552 kb on - strand, within oapA at 3431.552 kb on - strand, within oapA at 3431.552 kb on - strand, within oapA at 3431.825 kb on + strand, within oapA at 3431.826 kb on - strand, within oapA at 3431.856 kb on + strand, within oapA at 3432.106 kb on + strand at 3432.106 kb on + strand at 3432.106 kb on + strand at 3432.208 kb on - strand at 3432.228 kb on + strand at 3432.228 kb on + strand at 3432.229 kb on - strand at 3432.246 kb on + strand at 3432.246 kb on + strand at 3432.246 kb on + strand at 3432.246 kb on + strand at 3432.246 kb on + strand at 3432.246 kb on + strand at 3432.246 kb on + strand at 3433.709 kb on + strand at 3433.709 kb on + strand at 3433.710 kb on - strand at 3433.710 kb on - strand at 3433.710 kb on - strand at 3433.710 kb on - strand at 3433.722 kb on + strand at 3433.722 kb on + strand at 3433.722 kb on + strand at 3433.723 kb on - strand at 3433.723 kb on - strand at 3433.723 kb on - strand at 3433.723 kb on - strand at 3433.723 kb on - strand at 3433.723 kb on - strand at 3433.725 kb on + strand at 3433.726 kb on - strand at 3433.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 3,431,419 + oapA OKGIIK_15710 0.47 +0.3 3,431,419 + oapA OKGIIK_15710 0.47 -0.7 3,431,419 + oapA OKGIIK_15710 0.47 +1.1 3,431,420 - oapA OKGIIK_15710 0.47 -0.3 3,431,420 - oapA OKGIIK_15710 0.47 -1.3 3,431,420 - oapA OKGIIK_15710 0.47 -0.9 3,431,431 + oapA OKGIIK_15710 0.48 -0.7 3,431,431 + oapA OKGIIK_15710 0.48 +0.2 3,431,431 + oapA OKGIIK_15710 0.48 -0.9 3,431,431 + oapA OKGIIK_15710 0.48 -1.2 3,431,431 + oapA OKGIIK_15710 0.48 -1.0 3,431,432 - oapA OKGIIK_15710 0.48 -0.3 3,431,432 - oapA OKGIIK_15710 0.48 +0.1 3,431,432 - oapA OKGIIK_15710 0.48 -0.7 3,431,485 + oapA OKGIIK_15710 0.51 +0.9 3,431,485 + oapA OKGIIK_15710 0.51 +0.4 3,431,485 + oapA OKGIIK_15710 0.51 +0.9 3,431,485 + oapA OKGIIK_15710 0.51 -0.9 3,431,485 + oapA OKGIIK_15710 0.51 -0.9 3,431,485 + oapA OKGIIK_15710 0.51 -1.8 3,431,485 + oapA OKGIIK_15710 0.51 +0.9 3,431,485 + oapA OKGIIK_15710 0.51 -1.5 3,431,485 + oapA OKGIIK_15710 0.51 -0.8 3,431,485 + oapA OKGIIK_15710 0.51 -1.3 3,431,486 - oapA OKGIIK_15710 0.51 +0.2 3,431,486 - oapA OKGIIK_15710 0.51 +0.2 3,431,551 + oapA OKGIIK_15710 0.56 -2.0 3,431,552 - oapA OKGIIK_15710 0.56 +0.7 3,431,552 - oapA OKGIIK_15710 0.56 +0.6 3,431,552 - oapA OKGIIK_15710 0.56 -1.7 3,431,825 + oapA OKGIIK_15710 0.75 -0.3 3,431,826 - oapA OKGIIK_15710 0.75 -0.7 3,431,856 + oapA OKGIIK_15710 0.77 +0.7 3,432,106 + -0.0 3,432,106 + -0.9 3,432,106 + -0.2 3,432,208 - -0.3 3,432,228 + -1.3 3,432,228 + +0.9 3,432,229 - +0.7 3,432,246 + +0.4 3,432,246 + +0.3 3,432,246 + +0.4 3,432,246 + -0.7 3,432,246 + -0.7 3,432,246 + +1.3 3,432,246 + -1.3 3,433,709 + +0.1 3,433,709 + -0.0 3,433,710 - -0.5 3,433,710 - +0.7 3,433,710 - -1.3 3,433,710 - -1.8 3,433,722 + -1.1 3,433,722 + -1.1 3,433,722 + +0.1 3,433,723 - -0.7 3,433,723 - -0.2 3,433,723 - +0.1 3,433,723 - -2.2 3,433,723 - -0.3 3,433,723 - -2.9 3,433,725 + +0.5 3,433,726 - -1.5 3,433,820 - -0.7
Or see this region's nucleotide sequence