Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panE and OKGIIK_09945 are separated by 1 nucleotides OKGIIK_09945 and sufS,csdA are separated by 75 nucleotides sufS,csdA and sufD are separated by 52 nucleotides
OKGIIK_09940: panE - 2-dehydropantoate 2-reductase, at 2,144,870 to 2,145,802
panE
OKGIIK_09945: OKGIIK_09945 - Acyltransferase, at 2,145,804 to 2,146,718
_09945
OKGIIK_09950: sufS,csdA - cysteine desulfurase CsdA, at 2,146,794 to 2,148,041
sufS,csdA
OKGIIK_09955: sufD - Fe-S cluster assembly protein SufD, at 2,148,094 to 2,149,413
sufD
Position (kb)
2146
2147
2148
2149 Strain fitness (log2 ratio)
-2
-1
0
1 at 2145.802 kb on + strand at 2145.802 kb on + strand at 2145.802 kb on + strand at 2145.802 kb on + strand at 2145.802 kb on + strand at 2145.803 kb on - strand at 2145.803 kb on - strand at 2145.925 kb on + strand, within OKGIIK_09945 at 2145.925 kb on + strand, within OKGIIK_09945 at 2145.925 kb on + strand, within OKGIIK_09945 at 2145.925 kb on + strand, within OKGIIK_09945 at 2145.925 kb on + strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2145.926 kb on - strand, within OKGIIK_09945 at 2146.126 kb on + strand, within OKGIIK_09945 at 2146.126 kb on + strand, within OKGIIK_09945 at 2146.127 kb on - strand, within OKGIIK_09945 at 2146.288 kb on + strand, within OKGIIK_09945 at 2146.289 kb on - strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.453 kb on + strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.454 kb on - strand, within OKGIIK_09945 at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.751 kb on + strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2146.752 kb on - strand at 2148.057 kb on - strand at 2148.057 kb on - strand at 2148.057 kb on - strand at 2148.057 kb on - strand at 2148.057 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM remove 2,145,802 + -0.9 2,145,802 + +1.4 2,145,802 + -1.8 2,145,802 + -1.1 2,145,802 + -0.4 2,145,803 - -0.6 2,145,803 - -1.1 2,145,925 + OKGIIK_09945 0.13 -0.3 2,145,925 + OKGIIK_09945 0.13 +1.2 2,145,925 + OKGIIK_09945 0.13 +1.3 2,145,925 + OKGIIK_09945 0.13 +0.3 2,145,925 + OKGIIK_09945 0.13 -1.8 2,145,926 - OKGIIK_09945 0.13 -1.2 2,145,926 - OKGIIK_09945 0.13 -2.5 2,145,926 - OKGIIK_09945 0.13 +1.0 2,145,926 - OKGIIK_09945 0.13 +0.6 2,145,926 - OKGIIK_09945 0.13 +0.2 2,145,926 - OKGIIK_09945 0.13 +1.0 2,145,926 - OKGIIK_09945 0.13 -1.6 2,146,126 + OKGIIK_09945 0.35 +0.0 2,146,126 + OKGIIK_09945 0.35 +0.0 2,146,127 - OKGIIK_09945 0.35 +0.7 2,146,288 + OKGIIK_09945 0.53 +0.2 2,146,289 - OKGIIK_09945 0.53 -0.6 2,146,453 + OKGIIK_09945 0.71 +0.3 2,146,453 + OKGIIK_09945 0.71 -1.4 2,146,453 + OKGIIK_09945 0.71 +0.2 2,146,453 + OKGIIK_09945 0.71 +1.6 2,146,453 + OKGIIK_09945 0.71 +0.5 2,146,453 + OKGIIK_09945 0.71 -0.2 2,146,453 + OKGIIK_09945 0.71 -1.1 2,146,453 + OKGIIK_09945 0.71 +0.4 2,146,453 + OKGIIK_09945 0.71 -0.1 2,146,453 + OKGIIK_09945 0.71 +0.3 2,146,453 + OKGIIK_09945 0.71 -0.4 2,146,453 + OKGIIK_09945 0.71 -1.1 2,146,453 + OKGIIK_09945 0.71 -0.8 2,146,453 + OKGIIK_09945 0.71 +1.0 2,146,454 - OKGIIK_09945 0.71 -0.1 2,146,454 - OKGIIK_09945 0.71 +0.2 2,146,454 - OKGIIK_09945 0.71 +0.4 2,146,454 - OKGIIK_09945 0.71 -0.5 2,146,454 - OKGIIK_09945 0.71 -0.7 2,146,454 - OKGIIK_09945 0.71 +0.0 2,146,454 - OKGIIK_09945 0.71 +1.5 2,146,454 - OKGIIK_09945 0.71 -0.4 2,146,454 - OKGIIK_09945 0.71 -0.6 2,146,454 - OKGIIK_09945 0.71 +1.4 2,146,454 - OKGIIK_09945 0.71 +0.0 2,146,454 - OKGIIK_09945 0.71 -0.1 2,146,751 + -0.9 2,146,751 + -0.9 2,146,751 + -0.7 2,146,751 + -0.6 2,146,751 + +0.4 2,146,751 + +1.2 2,146,751 + -0.1 2,146,751 + +1.3 2,146,752 - -0.3 2,146,752 - -0.4 2,146,752 - -1.3 2,146,752 - -0.7 2,146,752 - -2.3 2,146,752 - -0.6 2,146,752 - +0.1 2,146,752 - +1.3 2,146,752 - -0.6 2,146,752 - -0.8 2,146,752 - -0.2 2,148,057 - +0.6 2,148,057 - +0.0 2,148,057 - -1.1 2,148,057 - -1.0 2,148,057 - +0.5
Or see this region's nucleotide sequence