Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_09950

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpanE and OKGIIK_09945 are separated by 1 nucleotidesOKGIIK_09945 and sufS,csdA are separated by 75 nucleotidessufS,csdA and sufD are separated by 52 nucleotides OKGIIK_09940: panE - 2-dehydropantoate 2-reductase, at 2,144,870 to 2,145,802 panE OKGIIK_09945: OKGIIK_09945 - Acyltransferase, at 2,145,804 to 2,146,718 _09945 OKGIIK_09950: sufS,csdA - cysteine desulfurase CsdA, at 2,146,794 to 2,148,041 sufS,csdA OKGIIK_09955: sufD - Fe-S cluster assembly protein SufD, at 2,148,094 to 2,149,413 sufD Position (kb) 2146 2147 2148 2149Strain fitness (log2 ratio) -2 -1 0 1at 2145.802 kb on + strandat 2145.802 kb on + strandat 2145.802 kb on + strandat 2145.802 kb on + strandat 2145.802 kb on + strandat 2145.803 kb on - strandat 2145.803 kb on - strandat 2145.925 kb on + strand, within OKGIIK_09945at 2145.925 kb on + strand, within OKGIIK_09945at 2145.925 kb on + strand, within OKGIIK_09945at 2145.925 kb on + strand, within OKGIIK_09945at 2145.925 kb on + strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2145.926 kb on - strand, within OKGIIK_09945at 2146.126 kb on + strand, within OKGIIK_09945at 2146.126 kb on + strand, within OKGIIK_09945at 2146.127 kb on - strand, within OKGIIK_09945at 2146.288 kb on + strand, within OKGIIK_09945at 2146.289 kb on - strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.453 kb on + strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.454 kb on - strand, within OKGIIK_09945at 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.751 kb on + strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2146.752 kb on - strandat 2148.057 kb on - strandat 2148.057 kb on - strandat 2148.057 kb on - strandat 2148.057 kb on - strandat 2148.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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2,145,802 + -0.9
2,145,802 + +1.4
2,145,802 + -1.8
2,145,802 + -1.1
2,145,802 + -0.4
2,145,803 - -0.6
2,145,803 - -1.1
2,145,925 + OKGIIK_09945 0.13 -0.3
2,145,925 + OKGIIK_09945 0.13 +1.2
2,145,925 + OKGIIK_09945 0.13 +1.3
2,145,925 + OKGIIK_09945 0.13 +0.3
2,145,925 + OKGIIK_09945 0.13 -1.8
2,145,926 - OKGIIK_09945 0.13 -1.2
2,145,926 - OKGIIK_09945 0.13 -2.5
2,145,926 - OKGIIK_09945 0.13 +1.0
2,145,926 - OKGIIK_09945 0.13 +0.6
2,145,926 - OKGIIK_09945 0.13 +0.2
2,145,926 - OKGIIK_09945 0.13 +1.0
2,145,926 - OKGIIK_09945 0.13 -1.6
2,146,126 + OKGIIK_09945 0.35 +0.0
2,146,126 + OKGIIK_09945 0.35 +0.0
2,146,127 - OKGIIK_09945 0.35 +0.7
2,146,288 + OKGIIK_09945 0.53 +0.2
2,146,289 - OKGIIK_09945 0.53 -0.6
2,146,453 + OKGIIK_09945 0.71 +0.3
2,146,453 + OKGIIK_09945 0.71 -1.4
2,146,453 + OKGIIK_09945 0.71 +0.2
2,146,453 + OKGIIK_09945 0.71 +1.6
2,146,453 + OKGIIK_09945 0.71 +0.5
2,146,453 + OKGIIK_09945 0.71 -0.2
2,146,453 + OKGIIK_09945 0.71 -1.1
2,146,453 + OKGIIK_09945 0.71 +0.4
2,146,453 + OKGIIK_09945 0.71 -0.1
2,146,453 + OKGIIK_09945 0.71 +0.3
2,146,453 + OKGIIK_09945 0.71 -0.4
2,146,453 + OKGIIK_09945 0.71 -1.1
2,146,453 + OKGIIK_09945 0.71 -0.8
2,146,453 + OKGIIK_09945 0.71 +1.0
2,146,454 - OKGIIK_09945 0.71 -0.1
2,146,454 - OKGIIK_09945 0.71 +0.2
2,146,454 - OKGIIK_09945 0.71 +0.4
2,146,454 - OKGIIK_09945 0.71 -0.5
2,146,454 - OKGIIK_09945 0.71 -0.7
2,146,454 - OKGIIK_09945 0.71 +0.0
2,146,454 - OKGIIK_09945 0.71 +1.5
2,146,454 - OKGIIK_09945 0.71 -0.4
2,146,454 - OKGIIK_09945 0.71 -0.6
2,146,454 - OKGIIK_09945 0.71 +1.4
2,146,454 - OKGIIK_09945 0.71 +0.0
2,146,454 - OKGIIK_09945 0.71 -0.1
2,146,751 + -0.9
2,146,751 + -0.9
2,146,751 + -0.7
2,146,751 + -0.6
2,146,751 + +0.4
2,146,751 + +1.2
2,146,751 + -0.1
2,146,751 + +1.3
2,146,752 - -0.3
2,146,752 - -0.4
2,146,752 - -1.3
2,146,752 - -0.7
2,146,752 - -2.3
2,146,752 - -0.6
2,146,752 - +0.1
2,146,752 - +1.3
2,146,752 - -0.6
2,146,752 - -0.8
2,146,752 - -0.2
2,148,057 - +0.6
2,148,057 - +0.0
2,148,057 - -1.1
2,148,057 - -1.0
2,148,057 - +0.5

Or see this region's nucleotide sequence