Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07205

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntada and OKGIIK_07200 overlap by 4 nucleotidesOKGIIK_07200 and alkB overlap by 4 nucleotidesalkB and OKGIIK_07210 are separated by 0 nucleotidesOKGIIK_07210 and OKGIIK_07215 are separated by 76 nucleotides OKGIIK_07195: ada - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 1,593,005 to 1,594,084 ada OKGIIK_07200: OKGIIK_07200 - Proline hydroxylase, at 1,594,081 to 1,594,812 _07200 OKGIIK_07205: alkB - DNA oxidative demethylase AlkB, at 1,594,809 to 1,595,459 alkB OKGIIK_07210: OKGIIK_07210 - DNA-3-methyladenine glycosylase, at 1,595,460 to 1,596,098 _07210 OKGIIK_07215: OKGIIK_07215 - MBL fold metallo-hydrolase, at 1,596,175 to 1,597,095 _07215 Position (kb) 1594 1595 1596Strain fitness (log2 ratio) -2 -1 0 1at 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.896 kb on + strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1593.897 kb on - strand, within adaat 1594.132 kb on + strandat 1594.132 kb on + strandat 1594.132 kb on + strandat 1594.132 kb on + strandat 1594.132 kb on + strandat 1594.132 kb on + strandat 1594.132 kb on + strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.133 kb on - strandat 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.231 kb on + strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.232 kb on - strand, within OKGIIK_07200at 1594.297 kb on + strand, within OKGIIK_07200at 1594.297 kb on + strand, within OKGIIK_07200at 1594.297 kb on + strand, within OKGIIK_07200at 1594.298 kb on - strand, within OKGIIK_07200at 1594.298 kb on - strand, within OKGIIK_07200at 1594.298 kb on - strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.303 kb on + strand, within OKGIIK_07200at 1594.304 kb on - strand, within OKGIIK_07200at 1594.312 kb on + strand, within OKGIIK_07200at 1594.313 kb on - strand, within OKGIIK_07200at 1594.354 kb on + strand, within OKGIIK_07200at 1594.355 kb on - strand, within OKGIIK_07200at 1594.355 kb on - strand, within OKGIIK_07200at 1594.415 kb on - strand, within OKGIIK_07200at 1594.492 kb on + strand, within OKGIIK_07200at 1594.492 kb on + strand, within OKGIIK_07200at 1594.493 kb on - strand, within OKGIIK_07200at 1594.493 kb on - strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.507 kb on + strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.508 kb on - strand, within OKGIIK_07200at 1594.531 kb on + strand, within OKGIIK_07200at 1594.531 kb on + strand, within OKGIIK_07200at 1594.531 kb on + strand, within OKGIIK_07200at 1594.532 kb on - strand, within OKGIIK_07200at 1594.532 kb on - strand, within OKGIIK_07200at 1594.532 kb on - strand, within OKGIIK_07200at 1594.726 kb on + strand, within OKGIIK_07200at 1594.726 kb on + strand, within OKGIIK_07200at 1594.727 kb on - strand, within OKGIIK_07200at 1595.049 kb on + strand, within alkBat 1595.050 kb on - strand, within alkBat 1595.050 kb on - strand, within alkBat 1595.050 kb on - strand, within alkBat 1595.050 kb on - strand, within alkBat 1595.101 kb on + strand, within alkBat 1595.101 kb on + strand, within alkBat 1595.101 kb on + strand, within alkBat 1595.102 kb on - strand, within alkBat 1595.120 kb on + strand, within alkBat 1595.181 kb on + strand, within alkBat 1595.182 kb on - strand, within alkBat 1595.182 kb on - strand, within alkBat 1595.182 kb on - strand, within alkBat 1595.347 kb on + strand, within alkBat 1595.347 kb on + strand, within alkBat 1595.347 kb on + strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.348 kb on - strand, within alkBat 1595.374 kb on - strand, within alkBat 1595.457 kb on + strandat 1595.457 kb on + strandat 1595.457 kb on + strandat 1595.457 kb on + strandat 1595.458 kb on - strandat 1595.574 kb on + strand, within OKGIIK_07210at 1595.574 kb on + strand, within OKGIIK_07210at 1595.587 kb on + strand, within OKGIIK_07210at 1595.587 kb on + strand, within OKGIIK_07210at 1595.587 kb on + strand, within OKGIIK_07210at 1595.587 kb on + strand, within OKGIIK_07210at 1595.587 kb on + strand, within OKGIIK_07210at 1595.587 kb on + strand, within OKGIIK_07210at 1595.588 kb on - strand, within OKGIIK_07210at 1595.588 kb on - strand, within OKGIIK_07210at 1595.588 kb on - strand, within OKGIIK_07210at 1595.601 kb on + strand, within OKGIIK_07210at 1595.601 kb on + strand, within OKGIIK_07210at 1595.601 kb on + strand, within OKGIIK_07210at 1595.602 kb on - strand, within OKGIIK_07210at 1595.602 kb on - strand, within OKGIIK_07210at 1595.658 kb on + strand, within OKGIIK_07210at 1595.658 kb on + strand, within OKGIIK_07210at 1595.792 kb on - strand, within OKGIIK_07210at 1595.878 kb on - strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.895 kb on + strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1595.896 kb on - strand, within OKGIIK_07210at 1596.048 kb on + strandat 1596.048 kb on + strandat 1596.048 kb on + strandat 1596.048 kb on + strandat 1596.048 kb on + strandat 1596.048 kb on + strandat 1596.048 kb on + strandat 1596.049 kb on - strandat 1596.049 kb on - strandat 1596.049 kb on - strandat 1596.049 kb on - strandat 1596.049 kb on - strandat 1596.049 kb on - strandat 1596.140 kb on + strandat 1596.140 kb on + strandat 1596.141 kb on - strandat 1596.141 kb on - strandat 1596.141 kb on - strandat 1596.238 kb on + strandat 1596.238 kb on + strandat 1596.238 kb on + strandat 1596.238 kb on + strandat 1596.238 kb on + strandat 1596.239 kb on - strandat 1596.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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1,593,896 + ada OKGIIK_07195 0.82 -0.9
1,593,896 + ada OKGIIK_07195 0.82 -0.3
1,593,896 + ada OKGIIK_07195 0.82 -0.3
1,593,896 + ada OKGIIK_07195 0.82 -0.8
1,593,896 + ada OKGIIK_07195 0.82 +0.1
1,593,896 + ada OKGIIK_07195 0.82 -0.8
1,593,896 + ada OKGIIK_07195 0.82 -0.6
1,593,896 + ada OKGIIK_07195 0.82 -1.6
1,593,896 + ada OKGIIK_07195 0.82 +0.7
1,593,896 + ada OKGIIK_07195 0.82 -0.6
1,593,896 + ada OKGIIK_07195 0.82 -0.7
1,593,897 - ada OKGIIK_07195 0.83 -0.6
1,593,897 - ada OKGIIK_07195 0.83 +0.3
1,593,897 - ada OKGIIK_07195 0.83 -0.9
1,593,897 - ada OKGIIK_07195 0.83 +0.0
1,593,897 - ada OKGIIK_07195 0.83 -0.6
1,593,897 - ada OKGIIK_07195 0.83 -0.3
1,593,897 - ada OKGIIK_07195 0.83 +1.2
1,593,897 - ada OKGIIK_07195 0.83 -1.4
1,593,897 - ada OKGIIK_07195 0.83 -1.0
1,593,897 - ada OKGIIK_07195 0.83 +0.4
1,594,132 + -1.3
1,594,132 + -0.6
1,594,132 + -0.5
1,594,132 + -0.6
1,594,132 + -0.3
1,594,132 + +0.2
1,594,132 + -0.6
1,594,133 - -1.9
1,594,133 - -0.9
1,594,133 - +1.5
1,594,133 - -1.1
1,594,133 - -0.9
1,594,133 - -2.0
1,594,133 - -1.8
1,594,133 - -0.3
1,594,133 - -0.6
1,594,133 - +0.7
1,594,133 - +1.0
1,594,133 - -0.4
1,594,133 - -1.3
1,594,231 + OKGIIK_07200 0.20 -0.9
1,594,231 + OKGIIK_07200 0.20 -0.1
1,594,231 + OKGIIK_07200 0.20 -0.3
1,594,231 + OKGIIK_07200 0.20 -2.0
1,594,231 + OKGIIK_07200 0.20 -1.3
1,594,231 + OKGIIK_07200 0.20 -1.7
1,594,231 + OKGIIK_07200 0.20 +0.4
1,594,231 + OKGIIK_07200 0.20 -0.9
1,594,232 - OKGIIK_07200 0.21 -1.1
1,594,232 - OKGIIK_07200 0.21 -0.3
1,594,232 - OKGIIK_07200 0.21 -1.3
1,594,232 - OKGIIK_07200 0.21 -0.6
1,594,232 - OKGIIK_07200 0.21 -0.4
1,594,232 - OKGIIK_07200 0.21 -0.7
1,594,232 - OKGIIK_07200 0.21 -0.1
1,594,232 - OKGIIK_07200 0.21 +1.1
1,594,232 - OKGIIK_07200 0.21 -1.1
1,594,232 - OKGIIK_07200 0.21 -1.1
1,594,232 - OKGIIK_07200 0.21 -0.6
1,594,232 - OKGIIK_07200 0.21 -1.7
1,594,232 - OKGIIK_07200 0.21 -2.5
1,594,232 - OKGIIK_07200 0.21 -2.1
1,594,232 - OKGIIK_07200 0.21 -1.4
1,594,232 - OKGIIK_07200 0.21 -0.9
1,594,297 + OKGIIK_07200 0.30 -0.6
1,594,297 + OKGIIK_07200 0.30 -0.7
1,594,297 + OKGIIK_07200 0.30 +0.7
1,594,298 - OKGIIK_07200 0.30 +1.1
1,594,298 - OKGIIK_07200 0.30 -0.6
1,594,298 - OKGIIK_07200 0.30 -0.9
1,594,303 + OKGIIK_07200 0.30 +0.3
1,594,303 + OKGIIK_07200 0.30 +0.6
1,594,303 + OKGIIK_07200 0.30 -0.3
1,594,303 + OKGIIK_07200 0.30 -0.9
1,594,303 + OKGIIK_07200 0.30 -2.5
1,594,303 + OKGIIK_07200 0.30 -0.7
1,594,303 + OKGIIK_07200 0.30 -0.5
1,594,304 - OKGIIK_07200 0.30 -0.3
1,594,312 + OKGIIK_07200 0.32 -0.4
1,594,313 - OKGIIK_07200 0.32 +0.4
1,594,354 + OKGIIK_07200 0.37 -0.1
1,594,355 - OKGIIK_07200 0.37 +1.6
1,594,355 - OKGIIK_07200 0.37 -1.7
1,594,415 - OKGIIK_07200 0.46 +1.3
1,594,492 + OKGIIK_07200 0.56 -1.1
1,594,492 + OKGIIK_07200 0.56 +0.4
1,594,493 - OKGIIK_07200 0.56 -1.5
1,594,493 - OKGIIK_07200 0.56 +0.7
1,594,507 + OKGIIK_07200 0.58 -0.6
1,594,507 + OKGIIK_07200 0.58 -0.3
1,594,507 + OKGIIK_07200 0.58 -0.9
1,594,507 + OKGIIK_07200 0.58 +0.0
1,594,507 + OKGIIK_07200 0.58 -0.6
1,594,507 + OKGIIK_07200 0.58 -0.6
1,594,507 + OKGIIK_07200 0.58 +0.7
1,594,507 + OKGIIK_07200 0.58 -1.7
1,594,508 - OKGIIK_07200 0.58 -0.4
1,594,508 - OKGIIK_07200 0.58 -2.2
1,594,508 - OKGIIK_07200 0.58 -0.6
1,594,508 - OKGIIK_07200 0.58 -1.4
1,594,508 - OKGIIK_07200 0.58 -1.3
1,594,508 - OKGIIK_07200 0.58 -1.2
1,594,508 - OKGIIK_07200 0.58 -0.1
1,594,508 - OKGIIK_07200 0.58 -0.4
1,594,508 - OKGIIK_07200 0.58 -0.6
1,594,531 + OKGIIK_07200 0.61 -0.3
1,594,531 + OKGIIK_07200 0.61 -2.1
1,594,531 + OKGIIK_07200 0.61 -0.3
1,594,532 - OKGIIK_07200 0.62 -1.4
1,594,532 - OKGIIK_07200 0.62 +1.0
1,594,532 - OKGIIK_07200 0.62 -0.7
1,594,726 + OKGIIK_07200 0.88 -0.3
1,594,726 + OKGIIK_07200 0.88 +0.7
1,594,727 - OKGIIK_07200 0.88 +0.6
1,595,049 + alkB OKGIIK_07205 0.37 -1.1
1,595,050 - alkB OKGIIK_07205 0.37 +0.1
1,595,050 - alkB OKGIIK_07205 0.37 -0.7
1,595,050 - alkB OKGIIK_07205 0.37 -0.4
1,595,050 - alkB OKGIIK_07205 0.37 -0.9
1,595,101 + alkB OKGIIK_07205 0.45 -1.4
1,595,101 + alkB OKGIIK_07205 0.45 +0.7
1,595,101 + alkB OKGIIK_07205 0.45 -0.3
1,595,102 - alkB OKGIIK_07205 0.45 +1.0
1,595,120 + alkB OKGIIK_07205 0.48 +0.6
1,595,181 + alkB OKGIIK_07205 0.57 +0.9
1,595,182 - alkB OKGIIK_07205 0.57 +0.7
1,595,182 - alkB OKGIIK_07205 0.57 -2.7
1,595,182 - alkB OKGIIK_07205 0.57 -0.7
1,595,347 + alkB OKGIIK_07205 0.83 +0.7
1,595,347 + alkB OKGIIK_07205 0.83 -2.4
1,595,347 + alkB OKGIIK_07205 0.83 -1.7
1,595,348 - alkB OKGIIK_07205 0.83 -1.1
1,595,348 - alkB OKGIIK_07205 0.83 -0.3
1,595,348 - alkB OKGIIK_07205 0.83 -0.9
1,595,348 - alkB OKGIIK_07205 0.83 +1.7
1,595,348 - alkB OKGIIK_07205 0.83 -0.3
1,595,348 - alkB OKGIIK_07205 0.83 -0.3
1,595,348 - alkB OKGIIK_07205 0.83 -1.1
1,595,374 - alkB OKGIIK_07205 0.87 -0.6
1,595,457 + -0.5
1,595,457 + -0.6
1,595,457 + -0.9
1,595,457 + -0.9
1,595,458 - -2.2
1,595,574 + OKGIIK_07210 0.18 +0.1
1,595,574 + OKGIIK_07210 0.18 -1.5
1,595,587 + OKGIIK_07210 0.20 -0.3
1,595,587 + OKGIIK_07210 0.20 -1.3
1,595,587 + OKGIIK_07210 0.20 -1.6
1,595,587 + OKGIIK_07210 0.20 -1.6
1,595,587 + OKGIIK_07210 0.20 +1.0
1,595,587 + OKGIIK_07210 0.20 -0.4
1,595,588 - OKGIIK_07210 0.20 -0.3
1,595,588 - OKGIIK_07210 0.20 +0.2
1,595,588 - OKGIIK_07210 0.20 -1.5
1,595,601 + OKGIIK_07210 0.22 -1.6
1,595,601 + OKGIIK_07210 0.22 -1.1
1,595,601 + OKGIIK_07210 0.22 -1.8
1,595,602 - OKGIIK_07210 0.22 -1.3
1,595,602 - OKGIIK_07210 0.22 -1.7
1,595,658 + OKGIIK_07210 0.31 -0.6
1,595,658 + OKGIIK_07210 0.31 -0.9
1,595,792 - OKGIIK_07210 0.52 -0.6
1,595,878 - OKGIIK_07210 0.65 -0.9
1,595,895 + OKGIIK_07210 0.68 -1.1
1,595,895 + OKGIIK_07210 0.68 -2.4
1,595,895 + OKGIIK_07210 0.68 -0.9
1,595,895 + OKGIIK_07210 0.68 -1.1
1,595,895 + OKGIIK_07210 0.68 -0.3
1,595,895 + OKGIIK_07210 0.68 -0.8
1,595,895 + OKGIIK_07210 0.68 -0.9
1,595,895 + OKGIIK_07210 0.68 -2.4
1,595,895 + OKGIIK_07210 0.68 -0.2
1,595,895 + OKGIIK_07210 0.68 -0.3
1,595,895 + OKGIIK_07210 0.68 -0.3
1,595,895 + OKGIIK_07210 0.68 -0.6
1,595,896 - OKGIIK_07210 0.68 -0.6
1,595,896 - OKGIIK_07210 0.68 -1.3
1,595,896 - OKGIIK_07210 0.68 -1.3
1,595,896 - OKGIIK_07210 0.68 -0.3
1,595,896 - OKGIIK_07210 0.68 +1.1
1,595,896 - OKGIIK_07210 0.68 -0.0
1,595,896 - OKGIIK_07210 0.68 -1.5
1,595,896 - OKGIIK_07210 0.68 +0.4
1,595,896 - OKGIIK_07210 0.68 -0.3
1,595,896 - OKGIIK_07210 0.68 -1.3
1,595,896 - OKGIIK_07210 0.68 -1.3
1,595,896 - OKGIIK_07210 0.68 +0.1
1,596,048 + -0.2
1,596,048 + -2.6
1,596,048 + -1.4
1,596,048 + -1.7
1,596,048 + -1.9
1,596,048 + -0.3
1,596,048 + +0.3
1,596,049 - -1.3
1,596,049 - +1.7
1,596,049 - -0.7
1,596,049 - -0.2
1,596,049 - -0.8
1,596,049 - -0.9
1,596,140 + -0.8
1,596,140 + -0.6
1,596,141 - -0.3
1,596,141 - -1.6
1,596,141 - +1.7
1,596,238 + -1.2
1,596,238 + -0.8
1,596,238 + -2.1
1,596,238 + +0.7
1,596,238 + -0.6
1,596,239 - +0.1
1,596,239 - +1.7

Or see this region's nucleotide sequence