Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05715

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfabD and fabG are separated by 98 nucleotidesfabG and acpP are separated by 198 nucleotidesacpP and fabF are separated by 240 nucleotides OKGIIK_05710: fabD - ACP S-malonyltransferase, at 1,253,451 to 1,254,398 fabD OKGIIK_05715: fabG - 3-oxoacyl-ACP reductase FabG, at 1,254,497 to 1,255,240 fabG OKGIIK_05720: acpP - acyl carrier protein, at 1,255,439 to 1,255,678 acpP OKGIIK_05725: fabF - beta-ketoacyl-ACP synthase II, at 1,255,919 to 1,257,157 fabF Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -2 -1 0 1 2at 1254.396 kb on + strandat 1254.396 kb on + strandat 1254.396 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.229 kb on + strandat 1255.238 kb on + strandat 1255.238 kb on + strandat 1255.277 kb on + strandat 1255.358 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.365 kb on + strandat 1255.795 kb on + strandat 1255.795 kb on + strandat 1255.795 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strandat 1255.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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1,254,396 + +0.9
1,254,396 + -2.3
1,254,396 + +0.2
1,255,229 + +0.8
1,255,229 + -0.7
1,255,229 + -0.0
1,255,229 + -0.8
1,255,229 + -1.6
1,255,229 + -1.2
1,255,229 + +0.7
1,255,229 + -0.9
1,255,229 + -0.8
1,255,229 + +0.1
1,255,229 + -0.7
1,255,229 + +1.8
1,255,238 + +0.4
1,255,238 + -0.5
1,255,277 + +0.1
1,255,358 + -0.1
1,255,365 + +0.1
1,255,365 + -0.7
1,255,365 + -0.2
1,255,365 + -0.9
1,255,365 + +0.8
1,255,365 + +0.1
1,255,365 + -0.5
1,255,365 + -0.5
1,255,365 + -0.3
1,255,365 + -0.6
1,255,365 + +1.9
1,255,795 + -0.2
1,255,795 + +0.1
1,255,795 + +0.7
1,255,905 + +1.7
1,255,905 + -1.6
1,255,905 + +0.2
1,255,905 + -0.2
1,255,905 + -1.2
1,255,905 + -0.9
1,255,905 + -0.5
1,255,905 + -0.9
1,255,905 + +0.7
1,255,905 + -0.1
1,255,905 + +0.9
1,255,905 + -0.0
1,255,905 + +0.9
1,255,905 + +1.1
1,255,905 + -0.5
1,255,905 + -0.7

Or see this region's nucleotide sequence