Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03815

Experiment: R2A_PIPES with Aluminum chloride 0.28125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuB and OKGIIK_03815 are separated by 276 nucleotidesOKGIIK_03815 and OKGIIK_03820 are separated by 36 nucleotidesOKGIIK_03820 and OKGIIK_03825 are separated by 58 nucleotides OKGIIK_03810: leuB - isocitrate dehydrogenase, at 840,498 to 841,511 leuB OKGIIK_03815: OKGIIK_03815 - Carboxymuconolactone decarboxylase, at 841,788 to 842,249 _03815 OKGIIK_03820: OKGIIK_03820 - RNA polymerase sigma-70 factor, ECF subfamily, at 842,286 to 843,185 _03820 OKGIIK_03825: OKGIIK_03825 - Aspartyl beta-hydroxylase, at 843,244 to 844,200 _03825 Position (kb) 841 842 843Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 841.512 kb on + strandat 841.512 kb on + strandat 841.512 kb on + strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.513 kb on - strandat 841.629 kb on + strandat 841.629 kb on + strandat 841.629 kb on + strandat 841.629 kb on + strandat 841.760 kb on + strandat 841.760 kb on + strandat 841.760 kb on + strandat 841.760 kb on + strandat 841.760 kb on + strandat 841.761 kb on - strandat 841.761 kb on - strandat 841.761 kb on - strandat 841.777 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.810 kb on + strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.811 kb on - strandat 841.927 kb on + strand, within OKGIIK_03815at 841.928 kb on - strand, within OKGIIK_03815at 842.011 kb on + strand, within OKGIIK_03815at 842.011 kb on + strand, within OKGIIK_03815at 842.011 kb on + strand, within OKGIIK_03815at 842.011 kb on + strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.012 kb on - strand, within OKGIIK_03815at 842.104 kb on + strand, within OKGIIK_03815at 842.104 kb on + strand, within OKGIIK_03815at 842.104 kb on + strand, within OKGIIK_03815at 842.104 kb on + strand, within OKGIIK_03815at 842.104 kb on + strand, within OKGIIK_03815at 842.105 kb on - strand, within OKGIIK_03815at 842.221 kb on + strandat 842.221 kb on + strandat 842.221 kb on + strandat 842.221 kb on + strandat 842.222 kb on - strandat 842.222 kb on - strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.249 kb on + strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.250 kb on - strandat 842.470 kb on + strand, within OKGIIK_03820at 842.470 kb on + strand, within OKGIIK_03820at 842.482 kb on + strand, within OKGIIK_03820at 842.482 kb on + strand, within OKGIIK_03820at 842.482 kb on + strand, within OKGIIK_03820at 842.482 kb on + strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.483 kb on - strand, within OKGIIK_03820at 842.491 kb on - strand, within OKGIIK_03820at 842.492 kb on + strand, within OKGIIK_03820at 842.492 kb on + strand, within OKGIIK_03820at 842.492 kb on + strand, within OKGIIK_03820at 842.492 kb on + strand, within OKGIIK_03820at 842.492 kb on + strand, within OKGIIK_03820at 842.492 kb on + strand, within OKGIIK_03820at 842.493 kb on - strand, within OKGIIK_03820at 842.493 kb on - strand, within OKGIIK_03820at 842.513 kb on - strand, within OKGIIK_03820at 842.513 kb on - strand, within OKGIIK_03820at 842.540 kb on - strand, within OKGIIK_03820at 842.540 kb on - strand, within OKGIIK_03820at 842.541 kb on + strand, within OKGIIK_03820at 842.541 kb on + strand, within OKGIIK_03820at 842.542 kb on - strand, within OKGIIK_03820at 842.797 kb on + strand, within OKGIIK_03820at 842.797 kb on + strand, within OKGIIK_03820at 842.797 kb on + strand, within OKGIIK_03820at 842.797 kb on + strand, within OKGIIK_03820at 842.798 kb on - strand, within OKGIIK_03820at 842.798 kb on - strand, within OKGIIK_03820at 842.798 kb on - strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.805 kb on + strand, within OKGIIK_03820at 842.806 kb on - strand, within OKGIIK_03820at 842.806 kb on - strand, within OKGIIK_03820at 842.806 kb on - strand, within OKGIIK_03820at 842.806 kb on - strand, within OKGIIK_03820at 842.806 kb on - strand, within OKGIIK_03820at 842.876 kb on + strand, within OKGIIK_03820at 842.876 kb on + strand, within OKGIIK_03820at 842.876 kb on + strand, within OKGIIK_03820at 842.877 kb on - strand, within OKGIIK_03820at 842.877 kb on - strand, within OKGIIK_03820at 842.877 kb on - strand, within OKGIIK_03820at 842.877 kb on - strand, within OKGIIK_03820at 842.877 kb on - strand, within OKGIIK_03820at 842.957 kb on - strand, within OKGIIK_03820at 842.957 kb on - strand, within OKGIIK_03820at 843.127 kb on + strandat 843.127 kb on + strandat 843.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.28125 mM
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841,512 + +0.1
841,512 + -0.8
841,512 + -1.0
841,513 - +1.8
841,513 - +1.1
841,513 - -0.5
841,513 - -1.4
841,513 - +0.1
841,513 - +0.5
841,513 - -0.5
841,513 - +0.4
841,513 - +1.3
841,513 - +0.9
841,513 - -1.3
841,513 - -1.1
841,629 + -0.0
841,629 + -1.2
841,629 + -1.8
841,629 + -0.5
841,760 + +0.1
841,760 + +1.2
841,760 + +1.4
841,760 + +0.1
841,760 + -1.1
841,761 - +0.7
841,761 - -2.0
841,761 - -0.1
841,777 + -0.4
841,810 + -0.2
841,810 + -0.7
841,810 + -1.0
841,810 + +0.6
841,810 + -2.2
841,810 + -1.7
841,810 + -1.2
841,810 + -1.4
841,810 + -0.2
841,811 - -3.3
841,811 - +0.3
841,811 - +0.5
841,811 - -0.6
841,811 - -0.2
841,811 - -0.5
841,811 - +1.1
841,811 - +0.5
841,811 - +0.0
841,927 + OKGIIK_03815 0.30 +0.4
841,928 - OKGIIK_03815 0.30 -0.7
842,011 + OKGIIK_03815 0.48 -1.4
842,011 + OKGIIK_03815 0.48 -0.4
842,011 + OKGIIK_03815 0.48 -0.5
842,011 + OKGIIK_03815 0.48 -0.5
842,012 - OKGIIK_03815 0.48 +0.2
842,012 - OKGIIK_03815 0.48 -0.7
842,012 - OKGIIK_03815 0.48 -0.9
842,012 - OKGIIK_03815 0.48 +1.9
842,012 - OKGIIK_03815 0.48 +0.7
842,012 - OKGIIK_03815 0.48 +0.1
842,012 - OKGIIK_03815 0.48 +0.7
842,104 + OKGIIK_03815 0.68 -1.4
842,104 + OKGIIK_03815 0.68 +0.1
842,104 + OKGIIK_03815 0.68 +0.2
842,104 + OKGIIK_03815 0.68 -1.8
842,104 + OKGIIK_03815 0.68 +0.1
842,105 - OKGIIK_03815 0.69 -1.7
842,221 + -1.7
842,221 + +1.1
842,221 + +0.3
842,221 + -0.9
842,222 - -0.1
842,222 - -0.9
842,249 + -0.8
842,249 + -2.3
842,249 + -0.0
842,249 + -0.1
842,249 + +2.7
842,249 + -0.9
842,249 + +0.8
842,249 + -0.7
842,249 + -0.5
842,249 + +0.5
842,249 + -0.9
842,249 + -0.2
842,249 + -1.4
842,249 + +0.1
842,249 + +0.5
842,249 + -0.5
842,249 + -1.5
842,249 + +2.4
842,250 - -1.5
842,250 - +0.9
842,250 - -0.3
842,250 - -0.4
842,250 - +1.8
842,250 - -0.2
842,250 - -0.9
842,250 - +0.8
842,250 - +1.3
842,250 - -0.4
842,470 + OKGIIK_03820 0.20 +0.1
842,470 + OKGIIK_03820 0.20 -0.7
842,482 + OKGIIK_03820 0.22 -0.9
842,482 + OKGIIK_03820 0.22 -1.3
842,482 + OKGIIK_03820 0.22 +0.1
842,482 + OKGIIK_03820 0.22 +1.7
842,483 - OKGIIK_03820 0.22 -0.9
842,483 - OKGIIK_03820 0.22 +1.1
842,483 - OKGIIK_03820 0.22 +1.0
842,483 - OKGIIK_03820 0.22 -0.1
842,483 - OKGIIK_03820 0.22 -1.1
842,483 - OKGIIK_03820 0.22 -1.2
842,483 - OKGIIK_03820 0.22 -1.7
842,491 - OKGIIK_03820 0.23 -0.1
842,492 + OKGIIK_03820 0.23 +2.6
842,492 + OKGIIK_03820 0.23 +1.2
842,492 + OKGIIK_03820 0.23 +0.8
842,492 + OKGIIK_03820 0.23 -1.9
842,492 + OKGIIK_03820 0.23 -0.6
842,492 + OKGIIK_03820 0.23 -1.1
842,493 - OKGIIK_03820 0.23 -1.5
842,493 - OKGIIK_03820 0.23 +1.0
842,513 - OKGIIK_03820 0.25 -0.5
842,513 - OKGIIK_03820 0.25 -1.4
842,540 - OKGIIK_03820 0.28 -0.5
842,540 - OKGIIK_03820 0.28 -0.2
842,541 + OKGIIK_03820 0.28 +0.8
842,541 + OKGIIK_03820 0.28 -0.4
842,542 - OKGIIK_03820 0.28 -1.6
842,797 + OKGIIK_03820 0.57 -1.6
842,797 + OKGIIK_03820 0.57 +0.2
842,797 + OKGIIK_03820 0.57 +0.3
842,797 + OKGIIK_03820 0.57 -1.2
842,798 - OKGIIK_03820 0.57 -0.1
842,798 - OKGIIK_03820 0.57 -1.5
842,798 - OKGIIK_03820 0.57 -0.9
842,805 + OKGIIK_03820 0.58 -0.1
842,805 + OKGIIK_03820 0.58 +0.5
842,805 + OKGIIK_03820 0.58 +1.0
842,805 + OKGIIK_03820 0.58 -0.2
842,805 + OKGIIK_03820 0.58 -0.2
842,805 + OKGIIK_03820 0.58 -0.5
842,805 + OKGIIK_03820 0.58 +0.9
842,806 - OKGIIK_03820 0.58 +0.2
842,806 - OKGIIK_03820 0.58 -0.6
842,806 - OKGIIK_03820 0.58 -0.7
842,806 - OKGIIK_03820 0.58 -0.5
842,806 - OKGIIK_03820 0.58 +0.3
842,876 + OKGIIK_03820 0.66 -0.2
842,876 + OKGIIK_03820 0.66 -0.1
842,876 + OKGIIK_03820 0.66 +0.5
842,877 - OKGIIK_03820 0.66 +1.8
842,877 - OKGIIK_03820 0.66 -0.7
842,877 - OKGIIK_03820 0.66 -2.9
842,877 - OKGIIK_03820 0.66 -1.6
842,877 - OKGIIK_03820 0.66 +0.3
842,957 - OKGIIK_03820 0.75 -0.2
842,957 - OKGIIK_03820 0.75 +1.1
843,127 + +1.1
843,127 + +1.1
843,128 - -1.1

Or see this region's nucleotide sequence