Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06970

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06968 and MPMX19_06969 overlap by 4 nucleotidesMPMX19_06969 and MPMX19_06970 are separated by 8 nucleotidesMPMX19_06970 and MPMX19_06971 are separated by 23 nucleotides MPMX19_06968: MPMX19_06968 - hypothetical protein, at 245,250 to 246,743 _06968 MPMX19_06969: MPMX19_06969 - hypothetical protein, at 246,740 to 246,994 _06969 MPMX19_06970: MPMX19_06970 - putative ABC transporter ATP-binding protein YknY, at 247,003 to 247,695 _06970 MPMX19_06971: MPMX19_06971 - Macrolide export ATP-binding/permease protein MacB, at 247,719 to 248,921 _06971 Position (kb) 247 248Strain fitness (log2 ratio) -2 -1 0 1at 246.165 kb on + strand, within MPMX19_06968at 246.166 kb on - strand, within MPMX19_06968at 246.501 kb on + strand, within MPMX19_06968at 246.501 kb on + strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.502 kb on - strand, within MPMX19_06968at 246.657 kb on + strandat 246.657 kb on + strandat 246.657 kb on + strandat 246.658 kb on - strandat 246.658 kb on - strandat 246.917 kb on + strand, within MPMX19_06969at 246.917 kb on + strand, within MPMX19_06969at 246.917 kb on + strand, within MPMX19_06969at 246.918 kb on - strand, within MPMX19_06969at 247.032 kb on + strandat 247.032 kb on + strandat 247.032 kb on + strandat 247.032 kb on + strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.033 kb on - strandat 247.284 kb on - strand, within MPMX19_06970at 248.267 kb on + strand, within MPMX19_06971at 248.267 kb on + strand, within MPMX19_06971at 248.267 kb on + strand, within MPMX19_06971at 248.268 kb on - strand, within MPMX19_06971

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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246,165 + MPMX19_06968 0.61 -1.1
246,166 - MPMX19_06968 0.61 -1.3
246,501 + MPMX19_06968 0.84 -0.9
246,501 + MPMX19_06968 0.84 -0.5
246,502 - MPMX19_06968 0.84 +0.7
246,502 - MPMX19_06968 0.84 -1.1
246,502 - MPMX19_06968 0.84 +0.5
246,502 - MPMX19_06968 0.84 -1.1
246,657 + -0.3
246,657 + +0.0
246,657 + -1.2
246,658 - -0.1
246,658 - +0.5
246,917 + MPMX19_06969 0.69 -0.1
246,917 + MPMX19_06969 0.69 -0.2
246,917 + MPMX19_06969 0.69 -1.6
246,918 - MPMX19_06969 0.70 -0.7
247,032 + -1.5
247,032 + -0.9
247,032 + -2.2
247,032 + -1.1
247,033 - -1.9
247,033 - -1.2
247,033 - -0.8
247,033 - +0.5
247,033 - -0.9
247,033 - -0.9
247,033 - -0.3
247,284 - MPMX19_06970 0.41 -0.5
248,267 + MPMX19_06971 0.46 +0.0
248,267 + MPMX19_06971 0.46 -1.2
248,267 + MPMX19_06971 0.46 -0.3
248,268 - MPMX19_06971 0.46 +0.7

Or see this region's nucleotide sequence