Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06950 and MPMX19_06951 are separated by 191 nucleotides MPMX19_06951 and MPMX19_06952 are separated by 74 nucleotides
MPMX19_06950: MPMX19_06950 - Glycine cleavage system transcriptional activator, at 226,330 to 227,229
_06950
MPMX19_06951: MPMX19_06951 - Beta-ketoadipyl-CoA thiolase, at 227,421 to 228,626
_06951
MPMX19_06952: MPMX19_06952 - Electron transfer flavoprotein subunit alpha, at 228,701 to 229,636
_06952
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.477 kb on + strand, within MPMX19_06950 at 226.478 kb on - strand, within MPMX19_06950 at 226.478 kb on - strand, within MPMX19_06950 at 226.478 kb on - strand, within MPMX19_06950 at 226.478 kb on - strand, within MPMX19_06950 at 226.639 kb on + strand, within MPMX19_06950 at 226.639 kb on + strand, within MPMX19_06950 at 226.639 kb on + strand, within MPMX19_06950 at 226.639 kb on + strand, within MPMX19_06950 at 226.639 kb on + strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 226.640 kb on - strand, within MPMX19_06950 at 227.020 kb on + strand, within MPMX19_06950 at 227.021 kb on - strand, within MPMX19_06950 at 227.143 kb on + strand at 227.143 kb on + strand at 227.143 kb on + strand at 227.144 kb on - strand at 227.144 kb on - strand at 227.259 kb on + strand at 227.259 kb on + strand at 227.259 kb on + strand at 227.259 kb on + strand at 227.260 kb on - strand at 227.260 kb on - strand at 227.260 kb on - strand at 227.275 kb on + strand at 227.275 kb on + strand at 227.275 kb on + strand at 227.276 kb on - strand at 227.276 kb on - strand at 227.276 kb on - strand at 227.276 kb on - strand at 227.420 kb on + strand at 227.420 kb on + strand at 227.420 kb on + strand at 227.420 kb on + strand at 227.420 kb on + strand at 227.420 kb on + strand at 227.420 kb on + strand at 227.421 kb on - strand at 227.421 kb on - strand at 227.421 kb on - strand at 227.421 kb on - strand at 227.421 kb on - strand at 227.469 kb on + strand at 227.940 kb on + strand, within MPMX19_06951 at 228.624 kb on + strand at 228.624 kb on + strand at 228.624 kb on + strand at 228.624 kb on + strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.625 kb on - strand at 228.676 kb on + strand at 228.677 kb on - strand at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 228.871 kb on - strand, within MPMX19_06952 at 229.534 kb on + strand, within MPMX19_06952
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 226,477 + MPMX19_06950 0.16 +0.1 226,478 - MPMX19_06950 0.16 +0.1 226,478 - MPMX19_06950 0.16 +1.1 226,478 - MPMX19_06950 0.16 -1.7 226,478 - MPMX19_06950 0.16 -0.1 226,639 + MPMX19_06950 0.34 -0.6 226,639 + MPMX19_06950 0.34 -0.2 226,639 + MPMX19_06950 0.34 +0.0 226,639 + MPMX19_06950 0.34 -0.5 226,639 + MPMX19_06950 0.34 -1.3 226,640 - MPMX19_06950 0.34 -0.8 226,640 - MPMX19_06950 0.34 +1.1 226,640 - MPMX19_06950 0.34 +0.5 226,640 - MPMX19_06950 0.34 -1.6 226,640 - MPMX19_06950 0.34 +1.0 226,640 - MPMX19_06950 0.34 -0.3 226,640 - MPMX19_06950 0.34 -0.1 227,020 + MPMX19_06950 0.77 +0.4 227,021 - MPMX19_06950 0.77 -0.3 227,143 + -0.7 227,143 + -0.8 227,143 + -1.4 227,144 - -1.0 227,144 - -1.3 227,259 + -0.7 227,259 + -0.3 227,259 + -0.5 227,259 + -0.3 227,260 - -0.1 227,260 - +1.1 227,260 - +1.9 227,275 + -0.4 227,275 + +0.0 227,275 + -1.9 227,276 - -0.9 227,276 - +0.2 227,276 - +0.7 227,276 - -0.9 227,420 + -2.1 227,420 + -0.9 227,420 + -1.1 227,420 + -0.1 227,420 + -0.7 227,420 + -2.1 227,420 + -0.3 227,421 - -0.1 227,421 - -1.9 227,421 - +0.6 227,421 - -1.0 227,421 - -0.9 227,469 + -0.5 227,940 + MPMX19_06951 0.43 -1.3 228,624 + +0.9 228,624 + -0.8 228,624 + -0.1 228,624 + -1.2 228,625 - -0.7 228,625 - -0.9 228,625 - +0.1 228,625 - -1.7 228,625 - +0.9 228,625 - +1.5 228,625 - +0.5 228,625 - -0.9 228,625 - -2.6 228,625 - +0.0 228,676 + +0.5 228,677 - -0.5 228,871 - MPMX19_06952 0.18 -1.7 228,871 - MPMX19_06952 0.18 -0.2 228,871 - MPMX19_06952 0.18 -1.1 228,871 - MPMX19_06952 0.18 +0.6 228,871 - MPMX19_06952 0.18 -1.0 228,871 - MPMX19_06952 0.18 -0.1 228,871 - MPMX19_06952 0.18 -0.5 228,871 - MPMX19_06952 0.18 +0.2 228,871 - MPMX19_06952 0.18 -1.7 228,871 - MPMX19_06952 0.18 -1.2 229,534 + MPMX19_06952 0.89 +0.1
Or see this region's nucleotide sequence