Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06893

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06892 and MPMX19_06893 are separated by 219 nucleotidesMPMX19_06893 and MPMX19_06894 are separated by 59 nucleotides MPMX19_06892: MPMX19_06892 - Putative aliphatic sulfonates transport permease protein SsuC, at 166,118 to 166,993 _06892 MPMX19_06893: MPMX19_06893 - Nitrilotriacetate monooxygenase component A, at 167,213 to 168,532 _06893 MPMX19_06894: MPMX19_06894 - hypothetical protein, at 168,592 to 169,626 _06894 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.483 kb on - strand, within MPMX19_06892at 166.483 kb on - strand, within MPMX19_06892at 166.483 kb on - strand, within MPMX19_06892at 166.483 kb on - strand, within MPMX19_06892at 167.179 kb on - strandat 167.221 kb on - strandat 167.221 kb on - strandat 168.354 kb on + strand, within MPMX19_06893at 168.354 kb on + strand, within MPMX19_06893at 168.830 kb on + strand, within MPMX19_06894at 168.830 kb on + strand, within MPMX19_06894at 168.830 kb on + strand, within MPMX19_06894at 168.830 kb on + strand, within MPMX19_06894at 168.831 kb on - strand, within MPMX19_06894at 168.831 kb on - strand, within MPMX19_06894at 168.831 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.403 kb on + strand, within MPMX19_06894at 169.404 kb on - strand, within MPMX19_06894

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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166,483 - MPMX19_06892 0.42 +1.2
166,483 - MPMX19_06892 0.42 +0.1
166,483 - MPMX19_06892 0.42 -1.3
166,483 - MPMX19_06892 0.42 -0.1
167,179 - -0.5
167,221 - +0.3
167,221 - -1.0
168,354 + MPMX19_06893 0.86 +0.2
168,354 + MPMX19_06893 0.86 -1.2
168,830 + MPMX19_06894 0.23 -1.7
168,830 + MPMX19_06894 0.23 -0.4
168,830 + MPMX19_06894 0.23 +0.3
168,830 + MPMX19_06894 0.23 -1.1
168,831 - MPMX19_06894 0.23 +0.5
168,831 - MPMX19_06894 0.23 -0.5
168,831 - MPMX19_06894 0.23 -1.3
168,885 - MPMX19_06894 0.28 -0.9
168,885 - MPMX19_06894 0.28 +1.9
168,885 - MPMX19_06894 0.28 -0.6
168,885 - MPMX19_06894 0.28 -1.6
168,885 - MPMX19_06894 0.28 +1.9
168,885 - MPMX19_06894 0.28 -0.9
168,885 - MPMX19_06894 0.28 -0.5
168,885 - MPMX19_06894 0.28 -1.3
168,885 - MPMX19_06894 0.28 -0.9
168,885 - MPMX19_06894 0.28 -0.5
169,013 + MPMX19_06894 0.41 -1.7
169,013 + MPMX19_06894 0.41 -1.4
169,013 + MPMX19_06894 0.41 +0.3
169,013 + MPMX19_06894 0.41 +0.1
169,013 + MPMX19_06894 0.41 -1.5
169,013 + MPMX19_06894 0.41 +0.2
169,013 + MPMX19_06894 0.41 -1.1
169,014 - MPMX19_06894 0.41 -0.9
169,014 - MPMX19_06894 0.41 +0.5
169,014 - MPMX19_06894 0.41 -1.3
169,014 - MPMX19_06894 0.41 -0.9
169,014 - MPMX19_06894 0.41 -1.4
169,014 - MPMX19_06894 0.41 -0.1
169,014 - MPMX19_06894 0.41 -2.9
169,146 - MPMX19_06894 0.54 -0.1
169,146 - MPMX19_06894 0.54 +0.3
169,146 - MPMX19_06894 0.54 -1.0
169,146 - MPMX19_06894 0.54 -0.1
169,146 - MPMX19_06894 0.54 -0.1
169,146 - MPMX19_06894 0.54 +0.8
169,403 + MPMX19_06894 0.78 -1.1
169,404 - MPMX19_06894 0.78 -0.2

Or see this region's nucleotide sequence