Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06869

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06868 and MPMX19_06869 are separated by 247 nucleotidesMPMX19_06869 and MPMX19_06870 are separated by 82 nucleotides MPMX19_06868: MPMX19_06868 - hypothetical protein, at 137,801 to 139,618 _06868 MPMX19_06869: MPMX19_06869 - NADH:FAD oxidoreductase, at 139,866 to 140,396 _06869 MPMX19_06870: MPMX19_06870 - Riboflavin biosynthesis protein RibBA, at 140,479 to 141,606 _06870 Position (kb) 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2at 138.870 kb on + strand, within MPMX19_06868at 138.871 kb on - strand, within MPMX19_06868at 139.101 kb on + strand, within MPMX19_06868at 139.102 kb on - strand, within MPMX19_06868at 139.102 kb on - strand, within MPMX19_06868at 139.102 kb on - strand, within MPMX19_06868at 139.102 kb on - strand, within MPMX19_06868at 139.102 kb on - strand, within MPMX19_06868at 139.102 kb on - strand, within MPMX19_06868at 139.176 kb on + strand, within MPMX19_06868at 139.176 kb on + strand, within MPMX19_06868at 139.177 kb on - strand, within MPMX19_06868at 139.230 kb on + strand, within MPMX19_06868at 139.230 kb on + strand, within MPMX19_06868at 139.231 kb on - strand, within MPMX19_06868at 139.332 kb on + strand, within MPMX19_06868at 139.332 kb on + strand, within MPMX19_06868at 139.332 kb on + strand, within MPMX19_06868at 139.332 kb on + strand, within MPMX19_06868at 139.332 kb on + strand, within MPMX19_06868at 139.332 kb on + strand, within MPMX19_06868at 139.333 kb on - strand, within MPMX19_06868at 139.333 kb on - strand, within MPMX19_06868at 139.562 kb on + strandat 139.562 kb on + strandat 139.607 kb on + strandat 139.607 kb on + strandat 139.608 kb on - strandat 139.608 kb on - strandat 139.608 kb on - strandat 139.608 kb on - strandat 139.845 kb on + strandat 139.845 kb on + strandat 139.846 kb on - strandat 139.846 kb on - strandat 139.867 kb on + strandat 139.868 kb on - strandat 139.868 kb on - strandat 139.976 kb on + strand, within MPMX19_06869at 140.379 kb on + strandat 140.379 kb on + strandat 140.380 kb on - strandat 140.380 kb on - strandat 140.532 kb on - strandat 140.624 kb on + strand, within MPMX19_06870at 140.624 kb on + strand, within MPMX19_06870at 140.624 kb on + strand, within MPMX19_06870at 140.624 kb on + strand, within MPMX19_06870at 140.625 kb on - strand, within MPMX19_06870at 140.625 kb on - strand, within MPMX19_06870at 140.625 kb on - strand, within MPMX19_06870at 140.625 kb on - strand, within MPMX19_06870at 140.625 kb on - strand, within MPMX19_06870at 141.147 kb on + strand, within MPMX19_06870at 141.147 kb on + strand, within MPMX19_06870at 141.147 kb on + strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.148 kb on - strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.216 kb on + strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870at 141.217 kb on - strand, within MPMX19_06870

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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138,870 + MPMX19_06868 0.59 -0.0
138,871 - MPMX19_06868 0.59 -0.2
139,101 + MPMX19_06868 0.72 +1.9
139,102 - MPMX19_06868 0.72 -0.9
139,102 - MPMX19_06868 0.72 +0.5
139,102 - MPMX19_06868 0.72 -0.9
139,102 - MPMX19_06868 0.72 -0.3
139,102 - MPMX19_06868 0.72 -1.1
139,102 - MPMX19_06868 0.72 -0.5
139,176 + MPMX19_06868 0.76 -1.1
139,176 + MPMX19_06868 0.76 -0.8
139,177 - MPMX19_06868 0.76 +1.1
139,230 + MPMX19_06868 0.79 -0.6
139,230 + MPMX19_06868 0.79 -1.9
139,231 - MPMX19_06868 0.79 +0.9
139,332 + MPMX19_06868 0.84 +0.1
139,332 + MPMX19_06868 0.84 +0.4
139,332 + MPMX19_06868 0.84 -1.2
139,332 + MPMX19_06868 0.84 -1.4
139,332 + MPMX19_06868 0.84 -0.3
139,332 + MPMX19_06868 0.84 +0.7
139,333 - MPMX19_06868 0.84 +0.3
139,333 - MPMX19_06868 0.84 -1.9
139,562 + -0.1
139,562 + -1.3
139,607 + -1.7
139,607 + -2.6
139,608 - -1.0
139,608 - -0.5
139,608 - -2.7
139,608 - -0.3
139,845 + -0.3
139,845 + +1.5
139,846 - -0.9
139,846 - -0.8
139,867 + -0.1
139,868 - +1.5
139,868 - -0.2
139,976 + MPMX19_06869 0.21 +0.9
140,379 + -0.4
140,379 + +0.5
140,380 - +0.1
140,380 - -0.9
140,532 - -1.2
140,624 + MPMX19_06870 0.13 -1.2
140,624 + MPMX19_06870 0.13 +0.5
140,624 + MPMX19_06870 0.13 +0.4
140,624 + MPMX19_06870 0.13 -0.5
140,625 - MPMX19_06870 0.13 -0.3
140,625 - MPMX19_06870 0.13 +1.3
140,625 - MPMX19_06870 0.13 +0.7
140,625 - MPMX19_06870 0.13 -0.5
140,625 - MPMX19_06870 0.13 -0.1
141,147 + MPMX19_06870 0.59 +2.1
141,147 + MPMX19_06870 0.59 +0.5
141,147 + MPMX19_06870 0.59 -2.3
141,148 - MPMX19_06870 0.59 -0.7
141,148 - MPMX19_06870 0.59 -0.8
141,148 - MPMX19_06870 0.59 -0.9
141,148 - MPMX19_06870 0.59 +0.5
141,148 - MPMX19_06870 0.59 -0.7
141,148 - MPMX19_06870 0.59 +0.1
141,216 + MPMX19_06870 0.65 -0.8
141,216 + MPMX19_06870 0.65 -0.0
141,216 + MPMX19_06870 0.65 -0.9
141,216 + MPMX19_06870 0.65 -1.7
141,217 - MPMX19_06870 0.65 -0.4
141,217 - MPMX19_06870 0.65 -2.4
141,217 - MPMX19_06870 0.65 +0.1
141,217 - MPMX19_06870 0.65 +1.1

Or see this region's nucleotide sequence