Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06845

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06844 and MPMX19_06845 are separated by 13 nucleotidesMPMX19_06845 and MPMX19_06846 are separated by 373 nucleotides MPMX19_06844: MPMX19_06844 - Putrescine--pyruvate aminotransferase, at 110,752 to 112,128 _06844 MPMX19_06845: MPMX19_06845 - hypothetical protein, at 112,142 to 113,011 _06845 MPMX19_06846: MPMX19_06846 - hypothetical protein, at 113,385 to 114,053 _06846 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.213 kb on + strand, within MPMX19_06844at 111.214 kb on - strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.581 kb on + strand, within MPMX19_06844at 111.581 kb on + strand, within MPMX19_06844at 111.582 kb on - strand, within MPMX19_06844at 111.582 kb on - strand, within MPMX19_06844at 111.684 kb on - strand, within MPMX19_06844at 111.740 kb on + strand, within MPMX19_06844at 111.740 kb on + strand, within MPMX19_06844at 111.741 kb on - strand, within MPMX19_06844at 111.743 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.879 kb on - strand, within MPMX19_06844at 111.944 kb on + strand, within MPMX19_06844at 112.067 kb on + strandat 112.806 kb on + strand, within MPMX19_06845at 112.807 kb on - strand, within MPMX19_06845at 112.999 kb on + strandat 112.999 kb on + strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.128 kb on - strandat 113.128 kb on - strandat 113.169 kb on - strandat 113.169 kb on - strandat 113.169 kb on - strandat 113.292 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.406 kb on + strandat 113.407 kb on - strandat 113.407 kb on - strandat 113.472 kb on + strand, within MPMX19_06846at 113.472 kb on + strand, within MPMX19_06846at 113.473 kb on - strand, within MPMX19_06846at 113.565 kb on + strand, within MPMX19_06846at 113.566 kb on - strand, within MPMX19_06846at 113.566 kb on - strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.609 kb on + strand, within MPMX19_06846at 113.610 kb on - strand, within MPMX19_06846at 113.610 kb on - strand, within MPMX19_06846at 113.649 kb on + strand, within MPMX19_06846at 113.649 kb on + strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.650 kb on - strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.802 kb on + strand, within MPMX19_06846at 113.803 kb on - strand, within MPMX19_06846at 113.803 kb on - strand, within MPMX19_06846at 113.826 kb on + strand, within MPMX19_06846at 113.826 kb on + strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.827 kb on - strand, within MPMX19_06846at 113.853 kb on + strand, within MPMX19_06846at 113.853 kb on + strand, within MPMX19_06846at 113.853 kb on + strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.854 kb on - strand, within MPMX19_06846at 113.994 kb on + strandat 113.994 kb on + strandat 113.995 kb on - strandat 113.995 kb on - strandat 113.997 kb on + strandat 113.998 kb on - strandat 113.998 kb on - strandat 113.998 kb on - strandat 114.003 kb on + strandat 114.003 kb on + strandat 114.004 kb on - strandat 114.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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111,164 + MPMX19_06844 0.30 -2.1
111,164 + MPMX19_06844 0.30 -0.1
111,164 + MPMX19_06844 0.30 -1.4
111,164 + MPMX19_06844 0.30 +0.1
111,165 - MPMX19_06844 0.30 -1.9
111,165 - MPMX19_06844 0.30 -0.3
111,165 - MPMX19_06844 0.30 -2.1
111,165 - MPMX19_06844 0.30 -1.3
111,170 + MPMX19_06844 0.30 -0.8
111,170 + MPMX19_06844 0.30 -0.4
111,170 + MPMX19_06844 0.30 -1.5
111,170 + MPMX19_06844 0.30 -1.3
111,171 - MPMX19_06844 0.30 -0.5
111,171 - MPMX19_06844 0.30 +0.1
111,171 - MPMX19_06844 0.30 -0.2
111,171 - MPMX19_06844 0.30 -0.9
111,213 + MPMX19_06844 0.33 -1.3
111,214 - MPMX19_06844 0.34 +0.5
111,218 + MPMX19_06844 0.34 -0.6
111,218 + MPMX19_06844 0.34 -0.7
111,218 + MPMX19_06844 0.34 -1.1
111,218 + MPMX19_06844 0.34 -0.7
111,218 + MPMX19_06844 0.34 +0.1
111,218 + MPMX19_06844 0.34 -1.4
111,218 + MPMX19_06844 0.34 -0.4
111,219 - MPMX19_06844 0.34 -0.7
111,219 - MPMX19_06844 0.34 -1.6
111,219 - MPMX19_06844 0.34 -0.8
111,219 - MPMX19_06844 0.34 -2.3
111,219 - MPMX19_06844 0.34 -0.1
111,219 - MPMX19_06844 0.34 -1.9
111,257 + MPMX19_06844 0.37 +0.7
111,257 + MPMX19_06844 0.37 -2.3
111,258 - MPMX19_06844 0.37 -0.5
111,258 - MPMX19_06844 0.37 -1.4
111,467 + MPMX19_06844 0.52 +0.2
111,467 + MPMX19_06844 0.52 -1.5
111,467 + MPMX19_06844 0.52 -0.5
111,467 + MPMX19_06844 0.52 +1.1
111,467 + MPMX19_06844 0.52 -1.5
111,468 - MPMX19_06844 0.52 -1.1
111,468 - MPMX19_06844 0.52 +0.9
111,468 - MPMX19_06844 0.52 -0.9
111,468 - MPMX19_06844 0.52 -0.3
111,468 - MPMX19_06844 0.52 -0.5
111,468 - MPMX19_06844 0.52 -1.0
111,468 - MPMX19_06844 0.52 +0.1
111,581 + MPMX19_06844 0.60 +0.1
111,581 + MPMX19_06844 0.60 -1.7
111,582 - MPMX19_06844 0.60 +1.2
111,582 - MPMX19_06844 0.60 +0.7
111,684 - MPMX19_06844 0.68 -0.3
111,740 + MPMX19_06844 0.72 -0.7
111,740 + MPMX19_06844 0.72 -0.5
111,741 - MPMX19_06844 0.72 -1.4
111,743 + MPMX19_06844 0.72 +1.2
111,797 + MPMX19_06844 0.76 -1.3
111,797 + MPMX19_06844 0.76 +1.5
111,797 + MPMX19_06844 0.76 +0.5
111,797 + MPMX19_06844 0.76 -0.6
111,798 - MPMX19_06844 0.76 +0.2
111,798 - MPMX19_06844 0.76 -0.5
111,798 - MPMX19_06844 0.76 -0.5
111,798 - MPMX19_06844 0.76 -0.4
111,798 - MPMX19_06844 0.76 -1.0
111,798 - MPMX19_06844 0.76 -0.3
111,798 - MPMX19_06844 0.76 -0.5
111,798 - MPMX19_06844 0.76 -0.9
111,798 - MPMX19_06844 0.76 -1.2
111,798 - MPMX19_06844 0.76 -1.2
111,879 - MPMX19_06844 0.82 +0.6
111,944 + MPMX19_06844 0.87 +1.5
112,067 + -0.9
112,806 + MPMX19_06845 0.76 +1.5
112,807 - MPMX19_06845 0.76 -0.3
112,999 + -1.1
112,999 + -0.2
113,000 - -0.3
113,000 - -0.3
113,000 - +0.7
113,000 - -0.3
113,127 + +0.2
113,127 + +0.7
113,127 + -0.5
113,128 - +0.5
113,128 - -0.1
113,169 - -1.5
113,169 - +0.7
113,169 - +1.5
113,292 + -1.1
113,406 + -0.9
113,406 + -1.0
113,406 + -0.0
113,406 + +0.2
113,406 + -0.3
113,407 - -1.9
113,407 - -1.5
113,472 + MPMX19_06846 0.13 -1.1
113,472 + MPMX19_06846 0.13 -1.1
113,473 - MPMX19_06846 0.13 -0.4
113,565 + MPMX19_06846 0.27 +0.9
113,566 - MPMX19_06846 0.27 -1.0
113,566 - MPMX19_06846 0.27 -0.5
113,609 + MPMX19_06846 0.33 -1.0
113,609 + MPMX19_06846 0.33 -2.6
113,609 + MPMX19_06846 0.33 +1.5
113,609 + MPMX19_06846 0.33 -0.9
113,610 - MPMX19_06846 0.34 -0.1
113,610 - MPMX19_06846 0.34 -1.2
113,649 + MPMX19_06846 0.39 +0.7
113,649 + MPMX19_06846 0.39 -0.2
113,650 - MPMX19_06846 0.40 -0.1
113,650 - MPMX19_06846 0.40 -0.1
113,650 - MPMX19_06846 0.40 -0.1
113,650 - MPMX19_06846 0.40 -1.2
113,802 + MPMX19_06846 0.62 -0.9
113,802 + MPMX19_06846 0.62 -0.1
113,802 + MPMX19_06846 0.62 +0.1
113,802 + MPMX19_06846 0.62 -0.4
113,803 - MPMX19_06846 0.62 +0.5
113,803 - MPMX19_06846 0.62 +0.1
113,826 + MPMX19_06846 0.66 -1.2
113,826 + MPMX19_06846 0.66 -0.7
113,827 - MPMX19_06846 0.66 -0.3
113,827 - MPMX19_06846 0.66 -0.3
113,827 - MPMX19_06846 0.66 -0.9
113,827 - MPMX19_06846 0.66 -1.9
113,827 - MPMX19_06846 0.66 -2.4
113,827 - MPMX19_06846 0.66 -0.5
113,827 - MPMX19_06846 0.66 -1.3
113,827 - MPMX19_06846 0.66 -1.0
113,827 - MPMX19_06846 0.66 +0.7
113,853 + MPMX19_06846 0.70 -0.7
113,853 + MPMX19_06846 0.70 -0.2
113,853 + MPMX19_06846 0.70 -1.6
113,854 - MPMX19_06846 0.70 +0.6
113,854 - MPMX19_06846 0.70 -1.2
113,854 - MPMX19_06846 0.70 -0.6
113,854 - MPMX19_06846 0.70 -0.8
113,854 - MPMX19_06846 0.70 -0.1
113,994 + -0.1
113,994 + -0.6
113,995 - -0.9
113,995 - +0.5
113,997 + -1.6
113,998 - -0.5
113,998 - -0.6
113,998 - -1.1
114,003 + +0.0
114,003 + +1.2
114,004 - -0.5
114,004 - -2.3

Or see this region's nucleotide sequence