Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06529

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06528 and MPMX19_06529 are separated by 37 nucleotidesMPMX19_06529 and MPMX19_06530 overlap by 4 nucleotides MPMX19_06528: MPMX19_06528 - hypothetical protein, at 315,222 to 316,268 _06528 MPMX19_06529: MPMX19_06529 - Choline trimethylamine-lyase activating enzyme, at 316,306 to 316,647 _06529 MPMX19_06530: MPMX19_06530 - hypothetical protein, at 316,644 to 318,299 _06530 Position (kb) 316 317Strain fitness (log2 ratio) -2 -1 0 1 2at 315.776 kb on - strand, within MPMX19_06528at 315.776 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.789 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.791 kb on - strand, within MPMX19_06528at 315.901 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 315.910 kb on + strand, within MPMX19_06528at 316.193 kb on + strandat 316.194 kb on - strandat 316.194 kb on - strandat 316.194 kb on - strandat 316.358 kb on + strand, within MPMX19_06529at 316.359 kb on - strand, within MPMX19_06529at 316.840 kb on + strand, within MPMX19_06530at 316.841 kb on - strand, within MPMX19_06530at 316.841 kb on - strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.987 kb on + strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 316.988 kb on - strand, within MPMX19_06530at 317.000 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530at 317.609 kb on - strand, within MPMX19_06530

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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315,776 - MPMX19_06528 0.53 -0.6
315,776 - MPMX19_06528 0.53 -0.1
315,789 - MPMX19_06528 0.54 -0.2
315,789 - MPMX19_06528 0.54 -1.1
315,789 - MPMX19_06528 0.54 -2.1
315,789 - MPMX19_06528 0.54 -0.5
315,789 - MPMX19_06528 0.54 -2.0
315,789 - MPMX19_06528 0.54 +1.5
315,789 - MPMX19_06528 0.54 -1.2
315,789 - MPMX19_06528 0.54 -0.5
315,789 - MPMX19_06528 0.54 -1.9
315,789 - MPMX19_06528 0.54 -0.0
315,789 - MPMX19_06528 0.54 -2.3
315,789 - MPMX19_06528 0.54 -0.5
315,789 - MPMX19_06528 0.54 +0.5
315,789 - MPMX19_06528 0.54 -1.1
315,789 - MPMX19_06528 0.54 +2.2
315,789 - MPMX19_06528 0.54 -0.3
315,789 - MPMX19_06528 0.54 -1.1
315,789 - MPMX19_06528 0.54 +0.6
315,789 - MPMX19_06528 0.54 +0.0
315,789 - MPMX19_06528 0.54 -0.9
315,789 - MPMX19_06528 0.54 +0.5
315,789 - MPMX19_06528 0.54 +0.9
315,789 - MPMX19_06528 0.54 -0.7
315,789 - MPMX19_06528 0.54 -1.3
315,789 - MPMX19_06528 0.54 -0.2
315,789 - MPMX19_06528 0.54 +1.1
315,789 - MPMX19_06528 0.54 +0.5
315,789 - MPMX19_06528 0.54 -0.5
315,789 - MPMX19_06528 0.54 +1.1
315,789 - MPMX19_06528 0.54 +0.7
315,789 - MPMX19_06528 0.54 -2.5
315,789 - MPMX19_06528 0.54 -0.2
315,789 - MPMX19_06528 0.54 -1.0
315,791 - MPMX19_06528 0.54 -0.3
315,791 - MPMX19_06528 0.54 -1.9
315,791 - MPMX19_06528 0.54 +1.2
315,791 - MPMX19_06528 0.54 -0.3
315,791 - MPMX19_06528 0.54 -0.1
315,791 - MPMX19_06528 0.54 +0.7
315,791 - MPMX19_06528 0.54 +0.8
315,791 - MPMX19_06528 0.54 +1.0
315,791 - MPMX19_06528 0.54 -1.6
315,791 - MPMX19_06528 0.54 -0.8
315,791 - MPMX19_06528 0.54 +1.5
315,791 - MPMX19_06528 0.54 -0.1
315,901 + MPMX19_06528 0.65 -0.3
315,910 + MPMX19_06528 0.66 -0.5
315,910 + MPMX19_06528 0.66 -0.5
315,910 + MPMX19_06528 0.66 -0.4
315,910 + MPMX19_06528 0.66 -2.5
315,910 + MPMX19_06528 0.66 +0.6
315,910 + MPMX19_06528 0.66 +0.0
315,910 + MPMX19_06528 0.66 +2.0
315,910 + MPMX19_06528 0.66 -1.0
316,193 + -0.9
316,194 - +0.5
316,194 - -0.0
316,194 - -1.1
316,358 + MPMX19_06529 0.15 -0.7
316,359 - MPMX19_06529 0.15 -1.5
316,840 + MPMX19_06530 0.12 -0.1
316,841 - MPMX19_06530 0.12 -0.5
316,841 - MPMX19_06530 0.12 +0.1
316,987 + MPMX19_06530 0.21 -2.1
316,987 + MPMX19_06530 0.21 -0.2
316,987 + MPMX19_06530 0.21 -0.5
316,987 + MPMX19_06530 0.21 -1.2
316,987 + MPMX19_06530 0.21 +0.6
316,987 + MPMX19_06530 0.21 -1.1
316,987 + MPMX19_06530 0.21 -0.7
316,987 + MPMX19_06530 0.21 +0.5
316,987 + MPMX19_06530 0.21 +2.0
316,988 - MPMX19_06530 0.21 -1.0
316,988 - MPMX19_06530 0.21 -2.0
316,988 - MPMX19_06530 0.21 -1.9
316,988 - MPMX19_06530 0.21 -1.0
316,988 - MPMX19_06530 0.21 -1.3
316,988 - MPMX19_06530 0.21 +0.2
316,988 - MPMX19_06530 0.21 -1.6
317,000 - MPMX19_06530 0.21 -0.7
317,609 - MPMX19_06530 0.58 +0.2
317,609 - MPMX19_06530 0.58 -1.1
317,609 - MPMX19_06530 0.58 -1.6

Or see this region's nucleotide sequence