Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06452 and MPMX19_06453 overlap by 4 nucleotides MPMX19_06453 and MPMX19_06454 overlap by 8 nucleotides MPMX19_06454 and MPMX19_06455 are separated by 295 nucleotides
MPMX19_06452: MPMX19_06452 - hypothetical protein, at 226,253 to 227,740
_06452
MPMX19_06453: MPMX19_06453 - hypothetical protein, at 227,737 to 228,612
_06453
MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290
_06454
MPMX19_06455: MPMX19_06455 - Tyrosine recombinase XerC, at 230,586 to 231,743
_06455
Position (kb) 228
229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.634 kb on + strand at 227.634 kb on + strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 228.009 kb on + strand, within MPMX19_06453 at 228.009 kb on + strand, within MPMX19_06453 at 228.010 kb on - strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.507 kb on - strand, within MPMX19_06453 at 228.596 kb on + strand at 228.597 kb on - strand at 228.597 kb on - strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.631 kb on - strand at 228.631 kb on - strand at 228.652 kb on + strand at 228.653 kb on - strand at 228.653 kb on - strand at 228.667 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.781 kb on + strand, within MPMX19_06454 at 228.782 kb on - strand, within MPMX19_06454 at 228.782 kb on - strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.949 kb on - strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.021 kb on + strand, within MPMX19_06454 at 229.057 kb on - strand, within MPMX19_06454 at 229.136 kb on + strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.440 kb on + strand, within MPMX19_06454 at 229.441 kb on - strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.603 kb on + strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.724 kb on - strand, within MPMX19_06454 at 229.738 kb on + strand, within MPMX19_06454 at 229.739 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.974 kb on + strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 230.061 kb on - strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.092 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.176 kb on - strand at 230.176 kb on - strand at 230.176 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.405 kb on + strand at 230.406 kb on - strand at 230.800 kb on - strand, within MPMX19_06455 at 230.823 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 227,613 + -0.3 227,613 + -1.4 227,613 + +0.9 227,613 + -0.3 227,613 + -1.7 227,613 + -0.7 227,613 + -0.5 227,613 + -2.6 227,613 + -1.7 227,613 + +1.5 227,613 + -1.4 227,614 - +0.2 227,614 - -0.8 227,614 - -0.3 227,614 - -2.4 227,614 - +0.5 227,614 - +0.0 227,614 - +0.4 227,614 - -0.7 227,614 - -1.6 227,614 - -1.4 227,614 - +0.9 227,614 - +0.9 227,614 - -0.5 227,634 + -1.1 227,634 + -2.1 227,635 - -1.4 227,635 - +1.2 227,635 - -1.4 227,635 - -1.3 227,707 + -0.3 227,707 + +0.2 227,707 + -0.0 227,707 + -1.3 227,708 - +0.4 227,708 - -0.2 227,708 - +0.7 227,708 - -0.5 227,708 - -2.0 227,708 - +0.9 227,708 - -0.5 227,728 + +0.2 227,728 + -1.4 227,728 + -0.1 227,728 + +0.7 227,729 - +1.2 227,729 - -0.1 227,729 - -0.6 227,729 - -0.4 227,729 - -0.3 227,762 + -0.0 227,762 + -0.9 227,762 + -0.2 227,762 + +0.2 227,762 + +0.5 227,762 + +0.3 227,762 + +1.2 227,762 + +0.2 227,762 + -1.1 227,762 + -0.7 227,763 - -0.3 227,763 - +0.0 227,763 - +1.9 227,763 - -0.1 227,763 - -2.5 227,763 - +0.1 228,009 + MPMX19_06453 0.31 -2.1 228,009 + MPMX19_06453 0.31 +0.4 228,010 - MPMX19_06453 0.31 -1.1 228,278 + MPMX19_06453 0.62 +0.9 228,278 + MPMX19_06453 0.62 -2.4 228,278 + MPMX19_06453 0.62 -1.3 228,278 + MPMX19_06453 0.62 -1.0 228,278 + MPMX19_06453 0.62 +0.2 228,278 + MPMX19_06453 0.62 -0.7 228,278 + MPMX19_06453 0.62 -0.7 228,278 + MPMX19_06453 0.62 -0.7 228,279 - MPMX19_06453 0.62 +1.2 228,279 - MPMX19_06453 0.62 -0.3 228,279 - MPMX19_06453 0.62 -0.3 228,279 - MPMX19_06453 0.62 -0.2 228,279 - MPMX19_06453 0.62 +0.0 228,279 - MPMX19_06453 0.62 -1.1 228,279 - MPMX19_06453 0.62 -0.2 228,279 - MPMX19_06453 0.62 -1.4 228,507 - MPMX19_06453 0.88 -1.1 228,596 + -1.1 228,597 - -0.6 228,597 - -1.5 228,617 + +1.5 228,617 + -0.5 228,617 + -0.9 228,618 - -1.6 228,618 - -1.3 228,618 - -1.3 228,618 - +1.5 228,618 - -0.3 228,618 - +0.6 228,630 + +1.1 228,630 + -2.5 228,630 + +0.9 228,630 + -0.3 228,631 - -2.0 228,631 - -0.3 228,652 + -1.1 228,653 - +0.6 228,653 - -1.5 228,667 + +0.2 228,684 + -0.4 228,684 + +0.9 228,684 + +0.9 228,684 + -1.3 228,685 - -1.5 228,685 - -0.2 228,685 - -1.2 228,685 - -0.2 228,685 - -0.3 228,781 + MPMX19_06454 0.10 -1.1 228,782 - MPMX19_06454 0.10 -0.5 228,782 - MPMX19_06454 0.10 -0.8 228,803 + MPMX19_06454 0.12 -0.6 228,803 + MPMX19_06454 0.12 -1.0 228,803 + MPMX19_06454 0.12 +0.2 228,803 + MPMX19_06454 0.12 -1.9 228,803 + MPMX19_06454 0.12 +1.3 228,803 + MPMX19_06454 0.12 +0.6 228,803 + MPMX19_06454 0.12 -0.6 228,803 + MPMX19_06454 0.12 -0.8 228,803 + MPMX19_06454 0.12 -0.0 228,803 + MPMX19_06454 0.12 -0.5 228,803 + MPMX19_06454 0.12 +0.7 228,803 + MPMX19_06454 0.12 -0.1 228,803 + MPMX19_06454 0.12 -0.5 228,804 - MPMX19_06454 0.12 -1.2 228,804 - MPMX19_06454 0.12 -0.7 228,804 - MPMX19_06454 0.12 -0.0 228,804 - MPMX19_06454 0.12 -2.3 228,804 - MPMX19_06454 0.12 -0.1 228,804 - MPMX19_06454 0.12 +0.3 228,948 + MPMX19_06454 0.20 -1.6 228,948 + MPMX19_06454 0.20 +0.3 228,948 + MPMX19_06454 0.20 -0.8 228,949 - MPMX19_06454 0.20 +0.5 228,999 + MPMX19_06454 0.23 -0.4 228,999 + MPMX19_06454 0.23 -0.2 228,999 + MPMX19_06454 0.23 -0.3 228,999 + MPMX19_06454 0.23 -0.4 229,000 - MPMX19_06454 0.23 +0.9 229,000 - MPMX19_06454 0.23 +0.9 229,000 - MPMX19_06454 0.23 -2.0 229,000 - MPMX19_06454 0.23 -1.3 229,000 - MPMX19_06454 0.23 -0.8 229,021 + MPMX19_06454 0.25 -2.4 229,057 - MPMX19_06454 0.27 +0.2 229,136 + MPMX19_06454 0.31 -1.7 229,137 - MPMX19_06454 0.32 -0.3 229,137 - MPMX19_06454 0.32 -0.4 229,137 - MPMX19_06454 0.32 -2.9 229,302 + MPMX19_06454 0.41 -1.7 229,302 + MPMX19_06454 0.41 -0.9 229,302 + MPMX19_06454 0.41 -0.6 229,303 - MPMX19_06454 0.41 -0.1 229,303 - MPMX19_06454 0.41 -0.2 229,303 - MPMX19_06454 0.41 +0.5 229,303 - MPMX19_06454 0.41 -0.5 229,303 - MPMX19_06454 0.41 -0.4 229,303 - MPMX19_06454 0.41 -0.7 229,303 - MPMX19_06454 0.41 -0.5 229,440 + MPMX19_06454 0.50 -0.9 229,441 - MPMX19_06454 0.50 -0.5 229,511 + MPMX19_06454 0.54 +0.2 229,511 + MPMX19_06454 0.54 -0.6 229,511 + MPMX19_06454 0.54 -1.9 229,511 + MPMX19_06454 0.54 -1.1 229,511 + MPMX19_06454 0.54 -1.3 229,511 + MPMX19_06454 0.54 -1.6 229,511 + MPMX19_06454 0.54 -0.1 229,511 + MPMX19_06454 0.54 -1.2 229,511 + MPMX19_06454 0.54 +0.3 229,511 + MPMX19_06454 0.54 -1.3 229,512 - MPMX19_06454 0.54 +0.3 229,512 - MPMX19_06454 0.54 +0.5 229,512 - MPMX19_06454 0.54 -0.5 229,512 - MPMX19_06454 0.54 -0.7 229,512 - MPMX19_06454 0.54 -0.5 229,603 + MPMX19_06454 0.59 +0.4 229,604 - MPMX19_06454 0.59 +1.5 229,604 - MPMX19_06454 0.59 -0.7 229,644 + MPMX19_06454 0.62 -0.9 229,644 + MPMX19_06454 0.62 +0.4 229,644 + MPMX19_06454 0.62 -0.5 229,644 + MPMX19_06454 0.62 +0.1 229,644 + MPMX19_06454 0.62 +0.3 229,644 + MPMX19_06454 0.62 +1.2 229,644 + MPMX19_06454 0.62 -0.7 229,644 + MPMX19_06454 0.62 -0.7 229,644 + MPMX19_06454 0.62 -0.3 229,644 + MPMX19_06454 0.62 -1.0 229,644 + MPMX19_06454 0.62 -0.5 229,644 + MPMX19_06454 0.62 -2.6 229,644 + MPMX19_06454 0.62 +0.0 229,644 + MPMX19_06454 0.62 +0.2 229,645 - MPMX19_06454 0.62 -0.1 229,645 - MPMX19_06454 0.62 -1.5 229,645 - MPMX19_06454 0.62 +0.8 229,645 - MPMX19_06454 0.62 -1.0 229,645 - MPMX19_06454 0.62 -0.7 229,645 - MPMX19_06454 0.62 -0.7 229,645 - MPMX19_06454 0.62 -0.7 229,645 - MPMX19_06454 0.62 +0.0 229,645 - MPMX19_06454 0.62 +0.9 229,645 - MPMX19_06454 0.62 -0.4 229,664 + MPMX19_06454 0.63 -1.9 229,664 + MPMX19_06454 0.63 -1.1 229,664 + MPMX19_06454 0.63 -1.2 229,665 - MPMX19_06454 0.63 +0.3 229,665 - MPMX19_06454 0.63 +0.5 229,665 - MPMX19_06454 0.63 -1.5 229,665 - MPMX19_06454 0.63 -0.5 229,723 + MPMX19_06454 0.66 +0.9 229,723 + MPMX19_06454 0.66 -1.8 229,723 + MPMX19_06454 0.66 +0.9 229,724 - MPMX19_06454 0.66 -0.8 229,738 + MPMX19_06454 0.67 -1.1 229,739 - MPMX19_06454 0.67 -1.2 229,853 - MPMX19_06454 0.74 -0.0 229,853 - MPMX19_06454 0.74 -1.1 229,974 + MPMX19_06454 0.81 -1.1 229,975 - MPMX19_06454 0.81 +1.3 229,975 - MPMX19_06454 0.81 -0.2 230,061 - MPMX19_06454 0.86 -1.1 230,091 + MPMX19_06454 0.88 -1.0 230,091 + MPMX19_06454 0.88 -0.8 230,092 - MPMX19_06454 0.88 -1.4 230,110 - MPMX19_06454 0.89 +0.0 230,110 - MPMX19_06454 0.89 -1.5 230,176 - -1.6 230,176 - -0.7 230,176 - -0.0 230,382 - +0.2 230,382 - +0.7 230,382 - -1.1 230,405 + -0.8 230,406 - -0.7 230,800 - MPMX19_06455 0.18 -0.2 230,823 + MPMX19_06455 0.20 -0.4 230,910 + MPMX19_06455 0.28 -0.7 230,910 + MPMX19_06455 0.28 +0.7 230,910 + MPMX19_06455 0.28 -1.3 230,910 + MPMX19_06455 0.28 -2.4 230,910 + MPMX19_06455 0.28 -0.2 230,910 + MPMX19_06455 0.28 -1.5 230,910 + MPMX19_06455 0.28 -0.5 230,910 + MPMX19_06455 0.28 -2.2 230,910 + MPMX19_06455 0.28 -2.3 230,911 - MPMX19_06455 0.28 +0.3 230,911 - MPMX19_06455 0.28 -1.0 230,911 - MPMX19_06455 0.28 +1.9 230,911 - MPMX19_06455 0.28 +0.2 230,911 - MPMX19_06455 0.28 -0.3 230,911 - MPMX19_06455 0.28 -1.3 230,911 - MPMX19_06455 0.28 -0.7 230,911 - MPMX19_06455 0.28 -0.4 230,911 - MPMX19_06455 0.28 -0.1
Or see this region's nucleotide sequence