Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06411 and MPMX19_06412 overlap by 4 nucleotides MPMX19_06412 and MPMX19_06413 are separated by 641 nucleotides
MPMX19_06411: MPMX19_06411 - Adaptive-response sensory-kinase SasA, at 178,563 to 179,909
_06411
MPMX19_06412: MPMX19_06412 - Transcriptional regulatory protein OmpR, at 179,906 to 180,505
_06412
MPMX19_06413: MPMX19_06413 - hypothetical protein, at 181,147 to 182,631
_06413
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 179.046 kb on + strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.890 kb on - strand at 179.937 kb on + strand at 179.937 kb on + strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.959 kb on + strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 180.036 kb on + strand, within MPMX19_06412 at 180.036 kb on + strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.212 kb on + strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.353 kb on - strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.459 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.493 kb on + strand at 180.493 kb on + strand at 180.494 kb on - strand at 180.520 kb on + strand at 180.521 kb on - strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.631 kb on + strand at 180.632 kb on - strand at 180.661 kb on + strand at 180.661 kb on + strand at 180.662 kb on - strand at 180.662 kb on - strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.808 kb on + strand at 180.809 kb on - strand at 180.896 kb on + strand at 180.971 kb on + strand at 180.980 kb on + strand at 180.980 kb on + strand at 180.981 kb on - strand at 181.008 kb on + strand at 181.084 kb on + strand at 181.084 kb on + strand at 181.084 kb on + strand at 181.085 kb on - strand at 181.085 kb on - strand at 181.085 kb on - strand at 181.132 kb on - strand at 181.132 kb on - strand at 181.160 kb on + strand at 181.160 kb on + strand at 181.161 kb on - strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.190 kb on - strand at 181.190 kb on - strand at 181.190 kb on - strand at 181.190 kb on - strand at 181.302 kb on + strand, within MPMX19_06413 at 181.302 kb on + strand, within MPMX19_06413 at 181.302 kb on + strand, within MPMX19_06413 at 181.303 kb on - strand, within MPMX19_06413 at 181.303 kb on - strand, within MPMX19_06413 at 181.303 kb on - strand, within MPMX19_06413 at 181.311 kb on + strand, within MPMX19_06413 at 181.311 kb on + strand, within MPMX19_06413 at 181.311 kb on + strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.501 kb on + strand, within MPMX19_06413 at 181.501 kb on + strand, within MPMX19_06413 at 181.501 kb on + strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 178,924 + MPMX19_06411 0.27 -0.5 178,924 + MPMX19_06411 0.27 -0.7 178,924 + MPMX19_06411 0.27 -0.2 178,925 - MPMX19_06411 0.27 -0.8 178,925 - MPMX19_06411 0.27 +0.9 178,929 + MPMX19_06411 0.27 -0.3 178,929 + MPMX19_06411 0.27 +0.3 178,929 + MPMX19_06411 0.27 -0.1 178,929 + MPMX19_06411 0.27 -0.1 178,929 + MPMX19_06411 0.27 -0.2 178,929 + MPMX19_06411 0.27 -0.7 178,930 - MPMX19_06411 0.27 -0.1 178,930 - MPMX19_06411 0.27 +0.5 178,930 - MPMX19_06411 0.27 -1.0 179,046 + MPMX19_06411 0.36 +0.5 179,199 - MPMX19_06411 0.47 +0.3 179,199 - MPMX19_06411 0.47 +0.7 179,419 - MPMX19_06411 0.64 -0.5 179,419 - MPMX19_06411 0.64 -0.8 179,524 + MPMX19_06411 0.71 +0.9 179,524 + MPMX19_06411 0.71 +0.0 179,524 + MPMX19_06411 0.71 -1.0 179,524 + MPMX19_06411 0.71 -2.4 179,524 + MPMX19_06411 0.71 -0.2 179,524 + MPMX19_06411 0.71 -0.1 179,524 + MPMX19_06411 0.71 +0.4 179,524 + MPMX19_06411 0.71 +0.3 179,525 - MPMX19_06411 0.71 -1.3 179,525 - MPMX19_06411 0.71 +1.2 179,525 - MPMX19_06411 0.71 +0.1 179,525 - MPMX19_06411 0.71 +0.4 179,525 - MPMX19_06411 0.71 -0.7 179,525 - MPMX19_06411 0.71 +0.2 179,529 + MPMX19_06411 0.72 -0.3 179,529 + MPMX19_06411 0.72 -1.0 179,530 - MPMX19_06411 0.72 +0.9 179,530 - MPMX19_06411 0.72 -0.3 179,530 - MPMX19_06411 0.72 -1.0 179,622 + MPMX19_06411 0.79 -0.9 179,622 + MPMX19_06411 0.79 +1.2 179,622 + MPMX19_06411 0.79 -0.3 179,623 - MPMX19_06411 0.79 +1.2 179,623 - MPMX19_06411 0.79 -1.1 179,804 + -0.1 179,804 + -0.8 179,804 + -1.8 179,804 + -0.7 179,804 + -1.1 179,804 + -0.6 179,804 + +0.5 179,804 + +0.8 179,804 + -2.1 179,804 + -1.0 179,804 + +0.9 179,804 + +0.2 179,804 + -0.8 179,805 - -1.0 179,805 - +1.2 179,805 - -1.9 179,805 - +0.4 179,805 - -0.7 179,805 - -1.9 179,805 - +0.5 179,805 - -0.3 179,805 - +0.9 179,805 - -1.2 179,805 - -0.9 179,805 - -2.2 179,805 - +1.1 179,805 - -0.1 179,805 - +0.4 179,868 - -0.4 179,868 - -0.5 179,868 - -1.2 179,890 - -0.7 179,937 + +0.5 179,937 + +0.7 179,938 - +0.5 179,938 - -0.3 179,938 - -0.3 179,959 + -0.6 179,960 - -0.8 179,960 - +1.5 179,960 - -1.0 180,036 + MPMX19_06412 0.22 +1.2 180,036 + MPMX19_06412 0.22 -0.1 180,037 - MPMX19_06412 0.22 +0.9 180,037 - MPMX19_06412 0.22 -0.2 180,126 + MPMX19_06412 0.37 -0.3 180,126 + MPMX19_06412 0.37 -0.3 180,127 - MPMX19_06412 0.37 -1.1 180,127 - MPMX19_06412 0.37 -0.4 180,212 + MPMX19_06412 0.51 -1.0 180,213 - MPMX19_06412 0.51 -0.6 180,213 - MPMX19_06412 0.51 -0.3 180,318 + MPMX19_06412 0.69 -0.8 180,318 + MPMX19_06412 0.69 +0.0 180,318 + MPMX19_06412 0.69 -0.3 180,318 + MPMX19_06412 0.69 -0.7 180,318 + MPMX19_06412 0.69 +0.8 180,319 - MPMX19_06412 0.69 +0.2 180,319 - MPMX19_06412 0.69 -2.1 180,319 - MPMX19_06412 0.69 -0.3 180,319 - MPMX19_06412 0.69 -0.1 180,353 - MPMX19_06412 0.74 -0.7 180,439 + MPMX19_06412 0.89 +0.5 180,439 + MPMX19_06412 0.89 +1.7 180,439 + MPMX19_06412 0.89 +0.2 180,439 + MPMX19_06412 0.89 -0.6 180,440 - MPMX19_06412 0.89 -1.7 180,440 - MPMX19_06412 0.89 -1.4 180,440 - MPMX19_06412 0.89 +1.3 180,440 - MPMX19_06412 0.89 +0.0 180,458 + -0.3 180,458 + +0.9 180,458 + -1.4 180,458 + -0.7 180,458 + -0.5 180,459 - -0.8 180,459 - -1.3 180,476 + -2.5 180,476 + -0.8 180,476 + -0.3 180,477 - -1.4 180,477 - -0.7 180,477 - +0.9 180,477 - -0.3 180,477 - -1.6 180,493 + -2.7 180,493 + -0.5 180,494 - -0.6 180,520 + +0.9 180,521 - -1.4 180,613 + +0.6 180,613 + +0.9 180,613 + -0.7 180,613 + +0.3 180,614 - -0.8 180,614 - -1.3 180,614 - -1.4 180,614 - -1.9 180,631 + -0.1 180,632 - -0.7 180,661 + +1.5 180,661 + -1.4 180,662 - -0.7 180,662 - -1.3 180,781 + -2.4 180,781 + -1.0 180,781 + -0.6 180,781 + -0.6 180,782 - -1.7 180,782 - -1.5 180,782 - -0.4 180,782 - +0.0 180,808 + +0.7 180,809 - -0.1 180,896 + -0.5 180,971 + +1.3 180,980 + +0.4 180,980 + +2.1 180,981 - -1.7 181,008 + +0.4 181,084 + -1.3 181,084 + -1.2 181,084 + +0.5 181,085 - -1.0 181,085 - -0.3 181,085 - +0.2 181,132 - -0.5 181,132 - -2.0 181,160 + -1.9 181,160 + -0.5 181,161 - -2.4 181,189 + -1.2 181,189 + -0.3 181,189 + -0.8 181,189 + +0.0 181,189 + -1.1 181,189 + -0.8 181,189 + +0.0 181,189 + -0.7 181,189 + -1.0 181,189 + -2.1 181,189 + -3.4 181,190 - -0.8 181,190 - -0.7 181,190 - -0.8 181,190 - +0.3 181,302 + MPMX19_06413 0.10 -1.2 181,302 + MPMX19_06413 0.10 +0.9 181,302 + MPMX19_06413 0.10 -1.3 181,303 - MPMX19_06413 0.11 -0.2 181,303 - MPMX19_06413 0.11 +0.5 181,303 - MPMX19_06413 0.11 +0.2 181,311 + MPMX19_06413 0.11 +0.3 181,311 + MPMX19_06413 0.11 -0.1 181,311 + MPMX19_06413 0.11 -1.7 181,312 - MPMX19_06413 0.11 -1.3 181,312 - MPMX19_06413 0.11 -0.8 181,312 - MPMX19_06413 0.11 -0.1 181,312 - MPMX19_06413 0.11 -1.4 181,312 - MPMX19_06413 0.11 -1.9 181,312 - MPMX19_06413 0.11 -0.2 181,312 - MPMX19_06413 0.11 -0.4 181,471 + MPMX19_06413 0.22 -0.3 181,471 + MPMX19_06413 0.22 +0.5 181,471 + MPMX19_06413 0.22 -0.7 181,471 + MPMX19_06413 0.22 -0.7 181,471 + MPMX19_06413 0.22 -0.3 181,471 + MPMX19_06413 0.22 +0.4 181,471 + MPMX19_06413 0.22 +0.6 181,471 + MPMX19_06413 0.22 +0.5 181,471 + MPMX19_06413 0.22 +0.3 181,472 - MPMX19_06413 0.22 -1.8 181,472 - MPMX19_06413 0.22 +0.3 181,472 - MPMX19_06413 0.22 -0.3 181,472 - MPMX19_06413 0.22 -1.5 181,472 - MPMX19_06413 0.22 -1.7 181,472 - MPMX19_06413 0.22 -0.7 181,472 - MPMX19_06413 0.22 -1.6 181,472 - MPMX19_06413 0.22 -0.8 181,478 + MPMX19_06413 0.22 -0.3 181,478 + MPMX19_06413 0.22 -0.2 181,478 + MPMX19_06413 0.22 -1.1 181,478 + MPMX19_06413 0.22 -0.7 181,478 + MPMX19_06413 0.22 +1.5 181,478 + MPMX19_06413 0.22 +0.0 181,478 + MPMX19_06413 0.22 -0.4 181,479 - MPMX19_06413 0.22 +0.2 181,479 - MPMX19_06413 0.22 -0.3 181,479 - MPMX19_06413 0.22 -1.1 181,479 - MPMX19_06413 0.22 +1.2 181,479 - MPMX19_06413 0.22 +0.7 181,479 - MPMX19_06413 0.22 +0.2 181,479 - MPMX19_06413 0.22 +0.0 181,479 - MPMX19_06413 0.22 +0.5 181,501 + MPMX19_06413 0.24 -0.4 181,501 + MPMX19_06413 0.24 -1.4 181,501 + MPMX19_06413 0.24 +0.9 181,502 - MPMX19_06413 0.24 +0.9 181,502 - MPMX19_06413 0.24 -1.4 181,502 - MPMX19_06413 0.24 -1.1 181,502 - MPMX19_06413 0.24 +0.0 181,502 - MPMX19_06413 0.24 -0.4 181,502 - MPMX19_06413 0.24 -0.8
Or see this region's nucleotide sequence