Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06290

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06289 and MPMX19_06290 are separated by 144 nucleotidesMPMX19_06290 and MPMX19_06291 overlap by 84 nucleotidesMPMX19_06291 and MPMX19_06292 overlap by 4 nucleotides MPMX19_06289: MPMX19_06289 - hypothetical protein, at 52,183 to 52,548 _06289 MPMX19_06290: MPMX19_06290 - hypothetical protein, at 52,693 to 53,400 _06290 MPMX19_06291: MPMX19_06291 - hypothetical protein, at 53,317 to 53,682 _06291 MPMX19_06292: MPMX19_06292 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 53,679 to 56,834 _06292 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1at 51.818 kb on - strandat 51.843 kb on - strandat 51.843 kb on - strandat 52.046 kb on + strandat 52.046 kb on + strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.047 kb on - strandat 52.048 kb on + strandat 52.049 kb on - strandat 52.061 kb on + strandat 52.061 kb on + strandat 52.062 kb on - strandat 52.074 kb on - strandat 52.109 kb on + strandat 52.110 kb on - strandat 52.110 kb on - strandat 52.110 kb on - strandat 52.146 kb on + strandat 52.146 kb on + strandat 52.146 kb on + strandat 52.147 kb on - strandat 52.251 kb on - strand, within MPMX19_06289at 52.495 kb on - strand, within MPMX19_06289at 52.520 kb on + strandat 52.520 kb on + strandat 52.520 kb on + strandat 52.520 kb on + strandat 52.520 kb on + strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.521 kb on - strandat 52.628 kb on + strandat 52.665 kb on + strandat 52.665 kb on + strandat 52.665 kb on + strandat 52.665 kb on + strandat 52.665 kb on + strandat 52.666 kb on - strandat 52.761 kb on + strandat 52.761 kb on + strandat 52.761 kb on + strandat 52.761 kb on + strandat 52.762 kb on - strandat 52.762 kb on - strandat 52.850 kb on + strand, within MPMX19_06290at 52.850 kb on + strand, within MPMX19_06290at 52.850 kb on + strand, within MPMX19_06290at 52.850 kb on + strand, within MPMX19_06290at 52.850 kb on + strand, within MPMX19_06290at 52.850 kb on + strand, within MPMX19_06290at 52.850 kb on + strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.851 kb on - strand, within MPMX19_06290at 52.908 kb on + strand, within MPMX19_06290at 52.908 kb on + strand, within MPMX19_06290at 52.908 kb on + strand, within MPMX19_06290at 52.908 kb on + strand, within MPMX19_06290at 52.909 kb on - strand, within MPMX19_06290at 52.909 kb on - strand, within MPMX19_06290at 52.909 kb on - strand, within MPMX19_06290at 52.973 kb on + strand, within MPMX19_06290at 52.973 kb on + strand, within MPMX19_06290at 52.973 kb on + strand, within MPMX19_06290at 52.973 kb on + strand, within MPMX19_06290at 52.973 kb on + strand, within MPMX19_06290at 52.974 kb on - strand, within MPMX19_06290at 52.974 kb on - strand, within MPMX19_06290at 52.974 kb on - strand, within MPMX19_06290at 52.974 kb on - strand, within MPMX19_06290at 52.974 kb on - strand, within MPMX19_06290at 52.974 kb on - strand, within MPMX19_06290at 53.015 kb on + strand, within MPMX19_06290at 53.015 kb on + strand, within MPMX19_06290at 53.015 kb on + strand, within MPMX19_06290at 53.015 kb on + strand, within MPMX19_06290at 53.015 kb on + strand, within MPMX19_06290at 53.015 kb on + strand, within MPMX19_06290at 53.016 kb on - strand, within MPMX19_06290at 53.016 kb on - strand, within MPMX19_06290at 53.074 kb on - strand, within MPMX19_06290at 53.213 kb on + strand, within MPMX19_06290at 53.214 kb on - strand, within MPMX19_06290at 53.214 kb on - strand, within MPMX19_06290at 53.333 kb on + strandat 53.334 kb on - strandat 53.334 kb on - strandat 53.334 kb on - strandat 53.578 kb on + strand, within MPMX19_06291at 53.578 kb on + strand, within MPMX19_06291at 53.579 kb on - strand, within MPMX19_06291at 53.803 kb on + strandat 53.971 kb on + strandat 54.008 kb on + strand, within MPMX19_06292at 54.085 kb on + strand, within MPMX19_06292at 54.086 kb on - strand, within MPMX19_06292at 54.086 kb on - strand, within MPMX19_06292at 54.086 kb on - strand, within MPMX19_06292at 54.086 kb on - strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292at 54.157 kb on + strand, within MPMX19_06292

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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51,818 - -1.6
51,843 - -1.1
51,843 - -1.1
52,046 + -0.6
52,046 + -1.1
52,047 - +1.2
52,047 - -0.7
52,047 - -1.1
52,048 + -2.1
52,049 - -0.2
52,061 + -1.8
52,061 + +0.2
52,062 - -1.1
52,074 - -1.5
52,109 + -0.5
52,110 - -0.7
52,110 - -1.3
52,110 - -0.6
52,146 + +0.2
52,146 + -1.0
52,146 + -0.6
52,147 - -0.2
52,251 - MPMX19_06289 0.19 +0.7
52,495 - MPMX19_06289 0.85 +0.9
52,520 + +0.5
52,520 + -1.0
52,520 + -1.3
52,520 + +0.8
52,520 + -1.1
52,521 - +0.3
52,521 - +0.6
52,521 - -0.7
52,521 - +0.5
52,521 - -1.1
52,521 - -1.8
52,521 - -0.1
52,521 - -1.8
52,521 - -1.7
52,628 + -1.2
52,665 + -1.2
52,665 + -1.0
52,665 + -0.6
52,665 + -1.0
52,665 + -0.7
52,666 - -0.8
52,761 + -0.5
52,761 + -0.3
52,761 + -0.2
52,761 + -0.5
52,762 - -1.2
52,762 - +0.5
52,850 + MPMX19_06290 0.22 -1.3
52,850 + MPMX19_06290 0.22 -2.2
52,850 + MPMX19_06290 0.22 +0.2
52,850 + MPMX19_06290 0.22 -0.9
52,850 + MPMX19_06290 0.22 +0.6
52,850 + MPMX19_06290 0.22 -1.0
52,850 + MPMX19_06290 0.22 -0.3
52,851 - MPMX19_06290 0.22 -2.1
52,851 - MPMX19_06290 0.22 +0.4
52,851 - MPMX19_06290 0.22 -1.2
52,851 - MPMX19_06290 0.22 +0.3
52,851 - MPMX19_06290 0.22 +0.2
52,851 - MPMX19_06290 0.22 -0.5
52,851 - MPMX19_06290 0.22 -2.1
52,908 + MPMX19_06290 0.30 +0.1
52,908 + MPMX19_06290 0.30 -0.1
52,908 + MPMX19_06290 0.30 -0.3
52,908 + MPMX19_06290 0.30 +0.2
52,909 - MPMX19_06290 0.31 +0.6
52,909 - MPMX19_06290 0.31 -1.9
52,909 - MPMX19_06290 0.31 -0.7
52,973 + MPMX19_06290 0.40 +0.9
52,973 + MPMX19_06290 0.40 +0.5
52,973 + MPMX19_06290 0.40 +0.3
52,973 + MPMX19_06290 0.40 -1.4
52,973 + MPMX19_06290 0.40 +0.3
52,974 - MPMX19_06290 0.40 +1.3
52,974 - MPMX19_06290 0.40 -0.0
52,974 - MPMX19_06290 0.40 +0.4
52,974 - MPMX19_06290 0.40 +0.9
52,974 - MPMX19_06290 0.40 -1.0
52,974 - MPMX19_06290 0.40 +1.3
53,015 + MPMX19_06290 0.45 +0.6
53,015 + MPMX19_06290 0.45 +0.5
53,015 + MPMX19_06290 0.45 +0.2
53,015 + MPMX19_06290 0.45 -0.8
53,015 + MPMX19_06290 0.45 -0.0
53,015 + MPMX19_06290 0.45 -0.3
53,016 - MPMX19_06290 0.46 +1.2
53,016 - MPMX19_06290 0.46 -0.5
53,074 - MPMX19_06290 0.54 +0.4
53,213 + MPMX19_06290 0.73 -0.4
53,214 - MPMX19_06290 0.74 -0.7
53,214 - MPMX19_06290 0.74 -1.1
53,333 + -0.7
53,334 - -1.2
53,334 - -1.3
53,334 - -3.3
53,578 + MPMX19_06291 0.71 -0.8
53,578 + MPMX19_06291 0.71 -0.3
53,579 - MPMX19_06291 0.72 -0.1
53,803 + +0.2
53,971 + +0.5
54,008 + MPMX19_06292 0.10 +0.7
54,085 + MPMX19_06292 0.13 -0.6
54,086 - MPMX19_06292 0.13 -0.6
54,086 - MPMX19_06292 0.13 -0.3
54,086 - MPMX19_06292 0.13 -0.5
54,086 - MPMX19_06292 0.13 -0.5
54,157 + MPMX19_06292 0.15 -0.7
54,157 + MPMX19_06292 0.15 -0.2
54,157 + MPMX19_06292 0.15 +0.1
54,157 + MPMX19_06292 0.15 -0.1
54,157 + MPMX19_06292 0.15 -1.2
54,157 + MPMX19_06292 0.15 +0.9
54,157 + MPMX19_06292 0.15 -0.9
54,157 + MPMX19_06292 0.15 -0.1
54,157 + MPMX19_06292 0.15 -0.4
54,157 + MPMX19_06292 0.15 +0.8
54,157 + MPMX19_06292 0.15 -0.8
54,157 + MPMX19_06292 0.15 -1.2
54,157 + MPMX19_06292 0.15 -0.6
54,157 + MPMX19_06292 0.15 -1.5
54,157 + MPMX19_06292 0.15 -0.8
54,157 + MPMX19_06292 0.15 -1.1
54,157 + MPMX19_06292 0.15 +0.4
54,157 + MPMX19_06292 0.15 -0.5
54,157 + MPMX19_06292 0.15 +0.1
54,157 + MPMX19_06292 0.15 -1.1
54,157 + MPMX19_06292 0.15 -0.8
54,157 + MPMX19_06292 0.15 -0.7

Or see this region's nucleotide sequence