Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06183

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06181 and MPMX19_06182 are separated by 22 nucleotidesMPMX19_06182 and MPMX19_06183 overlap by 4 nucleotidesMPMX19_06183 and MPMX19_06184 are separated by 226 nucleotides MPMX19_06181: MPMX19_06181 - Photosynthetic apparatus regulatory protein RegA, at 371,310 to 371,864 _06181 MPMX19_06182: MPMX19_06182 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 371,887 to 372,717 _06182 MPMX19_06183: MPMX19_06183 - Phosphoglucosamine mutase, at 372,714 to 374,087 _06183 MPMX19_06184: MPMX19_06184 - hypothetical protein, at 374,314 to 375,471 _06184 Position (kb) 372 373 374 375Strain fitness (log2 ratio) -1 0 1at 371.888 kb on + strandat 372.694 kb on - strandat 374.110 kb on - strandat 374.275 kb on + strandat 374.275 kb on + strandat 374.275 kb on + strandat 374.275 kb on + strandat 374.276 kb on - strandat 374.276 kb on - strandat 374.276 kb on - strandat 374.276 kb on - strandat 374.276 kb on - strandat 374.315 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
371,888 + -0.7
372,694 - -1.0
374,110 - -0.0
374,275 + -0.5
374,275 + -0.2
374,275 + -0.4
374,275 + -0.2
374,276 - -1.1
374,276 - -1.6
374,276 - -1.0
374,276 - -0.4
374,276 - +0.2
374,315 + +0.8

Or see this region's nucleotide sequence