Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05496 and MPMX19_05497 are separated by 1 nucleotides MPMX19_05497 and MPMX19_05498 are separated by 3 nucleotides MPMX19_05498 and MPMX19_05499 overlap by 4 nucleotides
MPMX19_05496: MPMX19_05496 - hypothetical protein, at 200,597 to 200,950
_05496
MPMX19_05497: MPMX19_05497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 200,952 to 201,662
_05497
MPMX19_05498: MPMX19_05498 - Lipopolysaccharide export system ATP-binding protein LptB, at 201,666 to 202,565
_05498
MPMX19_05499: MPMX19_05499 - hypothetical protein, at 202,562 to 204,052
_05499
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.972 kb on - strand at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498 at 202.373 kb on - strand, within MPMX19_05498
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 200,820 + MPMX19_05496 0.63 -0.5 200,820 + MPMX19_05496 0.63 +0.0 200,820 + MPMX19_05496 0.63 -1.0 200,820 + MPMX19_05496 0.63 +0.0 200,972 - -2.0 202,373 - MPMX19_05498 0.79 +0.8 202,373 - MPMX19_05498 0.79 +0.4 202,373 - MPMX19_05498 0.79 -1.5 202,373 - MPMX19_05498 0.79 -1.4 202,373 - MPMX19_05498 0.79 -2.6 202,373 - MPMX19_05498 0.79 -0.6 202,373 - MPMX19_05498 0.79 -1.0 202,373 - MPMX19_05498 0.79 -1.8 202,373 - MPMX19_05498 0.79 -0.6 202,373 - MPMX19_05498 0.79 -2.0 202,373 - MPMX19_05498 0.79 -1.4
Or see this region's nucleotide sequence