Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05465 and MPMX19_05466 are separated by 656 nucleotides
MPMX19_05465: MPMX19_05465 - IS5 family transposase ISAzs10, at 160,301 to 161,377
_05465
MPMX19_05466: MPMX19_05466 - hypothetical protein, at 162,034 to 163,674
_05466
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.351 kb on + strand at 159.352 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.363 kb on - strand at 159.373 kb on - strand at 159.373 kb on - strand at 160.208 kb on + strand at 161.502 kb on + strand at 161.502 kb on + strand at 161.502 kb on + strand at 161.502 kb on + strand at 161.526 kb on + strand at 161.526 kb on + strand at 161.539 kb on + strand at 161.539 kb on + strand at 161.575 kb on + strand at 161.576 kb on - strand at 161.576 kb on - strand at 161.622 kb on + strand at 161.681 kb on + strand at 161.681 kb on + strand at 161.681 kb on + strand at 161.681 kb on + strand at 161.682 kb on - strand at 161.682 kb on - strand at 161.682 kb on - strand at 161.733 kb on + strand at 161.733 kb on + strand at 161.733 kb on + strand at 161.734 kb on - strand at 161.734 kb on - strand at 161.750 kb on + strand at 161.751 kb on - strand at 161.751 kb on - strand at 161.751 kb on - strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.768 kb on + strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.769 kb on - strand at 161.786 kb on - strand at 161.786 kb on - strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.848 kb on + strand at 161.849 kb on - strand at 161.849 kb on - strand at 161.849 kb on - strand at 161.849 kb on - strand at 161.849 kb on - strand at 162.009 kb on + strand at 162.009 kb on + strand at 162.010 kb on - strand at 162.010 kb on - strand at 162.015 kb on + strand at 162.015 kb on + strand at 162.016 kb on - strand at 162.016 kb on - strand at 162.036 kb on - strand at 162.036 kb on - strand at 162.036 kb on - strand at 162.067 kb on + strand at 162.151 kb on + strand at 162.321 kb on + strand, within MPMX19_05466 at 162.343 kb on + strand, within MPMX19_05466 at 162.343 kb on + strand, within MPMX19_05466
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 159,351 + -1.2 159,351 + -0.6 159,351 + -0.6 159,351 + -0.8 159,352 - -0.8 159,363 - +1.8 159,363 - -1.0 159,363 - -0.3 159,363 - -1.8 159,363 - -0.8 159,373 - -0.8 159,373 - -0.4 160,208 + -0.2 161,502 + -0.8 161,502 + +1.6 161,502 + +0.6 161,502 + +1.1 161,526 + +1.1 161,526 + +0.8 161,539 + -0.6 161,539 + -0.3 161,575 + +0.9 161,576 - -2.0 161,576 - -2.3 161,622 + +0.3 161,681 + -1.5 161,681 + +0.4 161,681 + -0.6 161,681 + +0.2 161,682 - -0.1 161,682 - +0.6 161,682 - -0.4 161,733 + +0.4 161,733 + -1.4 161,733 + -1.6 161,734 - -2.5 161,734 - -1.4 161,750 + +0.2 161,751 - -1.8 161,751 - -1.0 161,751 - +0.4 161,768 + -1.5 161,768 + -1.0 161,768 + -2.1 161,768 + +1.4 161,768 + -0.4 161,768 + -0.1 161,768 + -1.5 161,769 - -0.8 161,769 - -0.3 161,769 - -0.6 161,769 - -3.4 161,769 - -0.0 161,769 - -1.0 161,769 - -0.8 161,769 - -0.7 161,769 - -0.8 161,786 - -0.2 161,786 - -2.0 161,848 + +0.4 161,848 + +0.6 161,848 + -2.2 161,848 + -0.1 161,848 + -1.4 161,848 + +0.8 161,849 - +0.0 161,849 - -0.8 161,849 - -2.0 161,849 - -0.4 161,849 - -1.2 162,009 + -1.3 162,009 + -2.5 162,010 - -1.6 162,010 - -1.5 162,015 + -1.2 162,015 + -1.8 162,016 - -0.6 162,016 - -0.8 162,036 - +0.6 162,036 - -0.9 162,036 - -1.0 162,067 + +0.8 162,151 + -0.4 162,321 + MPMX19_05466 0.17 +1.9 162,343 + MPMX19_05466 0.19 +3.4 162,343 + MPMX19_05466 0.19 -2.4
Or see this region's nucleotide sequence