Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05338

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05337 and MPMX19_05338 are separated by 39 nucleotidesMPMX19_05338 and MPMX19_05339 are separated by 38 nucleotides MPMX19_05337: MPMX19_05337 - Inner membrane transport permease YhhJ, at 8,574 to 9,701 _05337 MPMX19_05338: MPMX19_05338 - Phosphomannomutase/phosphoglucomutase, at 9,741 to 11,141 _05338 MPMX19_05339: MPMX19_05339 - UDP-glucose 6-dehydrogenase, at 11,180 to 12,511 _05339 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1at 8.859 kb on + strand, within MPMX19_05337at 8.859 kb on + strand, within MPMX19_05337at 8.860 kb on - strand, within MPMX19_05337at 8.860 kb on - strand, within MPMX19_05337at 8.860 kb on - strand, within MPMX19_05337at 8.860 kb on - strand, within MPMX19_05337at 8.860 kb on - strand, within MPMX19_05337at 9.075 kb on + strand, within MPMX19_05337at 9.075 kb on + strand, within MPMX19_05337at 9.075 kb on + strand, within MPMX19_05337at 9.075 kb on + strand, within MPMX19_05337at 9.076 kb on - strand, within MPMX19_05337at 9.076 kb on - strand, within MPMX19_05337at 9.092 kb on + strand, within MPMX19_05337at 9.093 kb on - strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.297 kb on + strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.298 kb on - strand, within MPMX19_05337at 9.372 kb on + strand, within MPMX19_05337at 9.372 kb on + strand, within MPMX19_05337at 9.372 kb on + strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.373 kb on - strand, within MPMX19_05337at 9.700 kb on - strandat 11.151 kb on - strandat 11.170 kb on - strandat 11.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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8,859 + MPMX19_05337 0.25 +0.6
8,859 + MPMX19_05337 0.25 -0.6
8,860 - MPMX19_05337 0.25 +0.6
8,860 - MPMX19_05337 0.25 -1.2
8,860 - MPMX19_05337 0.25 +0.4
8,860 - MPMX19_05337 0.25 -0.2
8,860 - MPMX19_05337 0.25 -1.7
9,075 + MPMX19_05337 0.44 +0.4
9,075 + MPMX19_05337 0.44 -0.2
9,075 + MPMX19_05337 0.44 -0.6
9,075 + MPMX19_05337 0.44 +0.0
9,076 - MPMX19_05337 0.45 -0.7
9,076 - MPMX19_05337 0.45 -1.4
9,092 + MPMX19_05337 0.46 -1.2
9,093 - MPMX19_05337 0.46 +0.0
9,297 + MPMX19_05337 0.64 -1.5
9,297 + MPMX19_05337 0.64 +0.6
9,297 + MPMX19_05337 0.64 -1.6
9,297 + MPMX19_05337 0.64 -0.8
9,297 + MPMX19_05337 0.64 +0.3
9,297 + MPMX19_05337 0.64 +0.1
9,297 + MPMX19_05337 0.64 -0.7
9,297 + MPMX19_05337 0.64 -1.1
9,297 + MPMX19_05337 0.64 -1.9
9,297 + MPMX19_05337 0.64 -1.0
9,297 + MPMX19_05337 0.64 +0.4
9,297 + MPMX19_05337 0.64 -1.6
9,298 - MPMX19_05337 0.64 -0.6
9,298 - MPMX19_05337 0.64 -0.8
9,298 - MPMX19_05337 0.64 -1.7
9,298 - MPMX19_05337 0.64 -0.3
9,298 - MPMX19_05337 0.64 +1.2
9,298 - MPMX19_05337 0.64 -1.8
9,298 - MPMX19_05337 0.64 -0.3
9,298 - MPMX19_05337 0.64 +0.0
9,298 - MPMX19_05337 0.64 -0.4
9,298 - MPMX19_05337 0.64 -0.4
9,298 - MPMX19_05337 0.64 -1.2
9,298 - MPMX19_05337 0.64 -3.0
9,372 + MPMX19_05337 0.71 +0.0
9,372 + MPMX19_05337 0.71 -2.0
9,372 + MPMX19_05337 0.71 -0.2
9,373 - MPMX19_05337 0.71 -1.0
9,373 - MPMX19_05337 0.71 +0.0
9,373 - MPMX19_05337 0.71 +1.4
9,373 - MPMX19_05337 0.71 +0.0
9,373 - MPMX19_05337 0.71 -0.8
9,373 - MPMX19_05337 0.71 -0.2
9,373 - MPMX19_05337 0.71 -0.1
9,700 - -0.4
11,151 - -1.2
11,170 - +0.6
11,182 - -0.1

Or see this region's nucleotide sequence