Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05330

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05329 and MPMX19_05330 are separated by 70 nucleotidesMPMX19_05330 and MPMX19_05331 overlap by 4 nucleotides MPMX19_05329: MPMX19_05329 - PTS system fructose-specific EIIB'BC component, at 869,792 to 871,564 _05329 MPMX19_05330: MPMX19_05330 - Tagatose-6-phosphate kinase, at 871,635 to 872,603 _05330 MPMX19_05331: MPMX19_05331 - hypothetical protein, at 872,600 to 875,140 _05331 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1at 870.642 kb on + strand, within MPMX19_05329at 870.643 kb on - strand, within MPMX19_05329at 870.643 kb on - strand, within MPMX19_05329at 870.643 kb on - strand, within MPMX19_05329at 870.651 kb on + strand, within MPMX19_05329at 870.651 kb on + strand, within MPMX19_05329at 870.652 kb on - strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.714 kb on + strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.715 kb on - strand, within MPMX19_05329at 870.745 kb on - strand, within MPMX19_05329at 870.745 kb on - strand, within MPMX19_05329at 870.745 kb on - strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.750 kb on + strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.751 kb on - strand, within MPMX19_05329at 870.843 kb on + strand, within MPMX19_05329at 870.843 kb on + strand, within MPMX19_05329at 870.843 kb on + strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 870.844 kb on - strand, within MPMX19_05329at 871.525 kb on + strandat 871.525 kb on + strandat 871.525 kb on + strandat 871.526 kb on - strandat 871.695 kb on + strandat 872.134 kb on + strand, within MPMX19_05330at 872.934 kb on + strand, within MPMX19_05331at 872.934 kb on + strand, within MPMX19_05331at 872.934 kb on + strand, within MPMX19_05331at 872.935 kb on - strand, within MPMX19_05331at 872.935 kb on - strand, within MPMX19_05331at 872.935 kb on - strand, within MPMX19_05331at 873.168 kb on + strand, within MPMX19_05331at 873.169 kb on - strand, within MPMX19_05331at 873.169 kb on - strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.351 kb on + strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.352 kb on - strand, within MPMX19_05331at 873.360 kb on + strand, within MPMX19_05331at 873.360 kb on + strand, within MPMX19_05331at 873.360 kb on + strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331at 873.361 kb on - strand, within MPMX19_05331

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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870,642 + MPMX19_05329 0.48 -0.3
870,643 - MPMX19_05329 0.48 -1.3
870,643 - MPMX19_05329 0.48 +1.0
870,643 - MPMX19_05329 0.48 -1.6
870,651 + MPMX19_05329 0.48 -0.4
870,651 + MPMX19_05329 0.48 -1.2
870,652 - MPMX19_05329 0.49 -0.6
870,714 + MPMX19_05329 0.52 -1.3
870,714 + MPMX19_05329 0.52 +0.5
870,714 + MPMX19_05329 0.52 -0.2
870,714 + MPMX19_05329 0.52 -1.7
870,715 - MPMX19_05329 0.52 -0.6
870,715 - MPMX19_05329 0.52 -1.3
870,715 - MPMX19_05329 0.52 -0.4
870,715 - MPMX19_05329 0.52 -1.6
870,715 - MPMX19_05329 0.52 -0.4
870,715 - MPMX19_05329 0.52 -0.1
870,715 - MPMX19_05329 0.52 -0.9
870,745 - MPMX19_05329 0.54 +0.4
870,745 - MPMX19_05329 0.54 +0.4
870,745 - MPMX19_05329 0.54 -0.1
870,750 + MPMX19_05329 0.54 -1.9
870,750 + MPMX19_05329 0.54 -0.3
870,750 + MPMX19_05329 0.54 -1.3
870,750 + MPMX19_05329 0.54 -0.9
870,750 + MPMX19_05329 0.54 +0.1
870,750 + MPMX19_05329 0.54 +0.8
870,750 + MPMX19_05329 0.54 -1.4
870,750 + MPMX19_05329 0.54 -0.8
870,750 + MPMX19_05329 0.54 +1.4
870,750 + MPMX19_05329 0.54 -1.5
870,750 + MPMX19_05329 0.54 +0.1
870,750 + MPMX19_05329 0.54 -2.3
870,750 + MPMX19_05329 0.54 -0.4
870,750 + MPMX19_05329 0.54 +0.4
870,750 + MPMX19_05329 0.54 -0.5
870,751 - MPMX19_05329 0.54 +0.2
870,751 - MPMX19_05329 0.54 -1.3
870,751 - MPMX19_05329 0.54 -1.1
870,751 - MPMX19_05329 0.54 -0.6
870,751 - MPMX19_05329 0.54 -0.2
870,751 - MPMX19_05329 0.54 -0.9
870,751 - MPMX19_05329 0.54 -0.1
870,751 - MPMX19_05329 0.54 -1.2
870,751 - MPMX19_05329 0.54 -0.2
870,751 - MPMX19_05329 0.54 -1.7
870,751 - MPMX19_05329 0.54 +0.2
870,751 - MPMX19_05329 0.54 -0.4
870,751 - MPMX19_05329 0.54 -1.2
870,751 - MPMX19_05329 0.54 -2.1
870,751 - MPMX19_05329 0.54 +0.4
870,751 - MPMX19_05329 0.54 -0.9
870,751 - MPMX19_05329 0.54 -0.7
870,843 + MPMX19_05329 0.59 -1.8
870,843 + MPMX19_05329 0.59 -0.2
870,843 + MPMX19_05329 0.59 -0.2
870,844 - MPMX19_05329 0.59 -0.6
870,844 - MPMX19_05329 0.59 -0.9
870,844 - MPMX19_05329 0.59 -0.6
870,844 - MPMX19_05329 0.59 -1.4
870,844 - MPMX19_05329 0.59 -1.5
870,844 - MPMX19_05329 0.59 +0.1
871,525 + -0.7
871,525 + -0.5
871,525 + -0.4
871,526 - +0.1
871,695 + +0.8
872,134 + MPMX19_05330 0.51 -0.2
872,934 + MPMX19_05331 0.13 -2.3
872,934 + MPMX19_05331 0.13 -1.4
872,934 + MPMX19_05331 0.13 +1.4
872,935 - MPMX19_05331 0.13 +0.4
872,935 - MPMX19_05331 0.13 -1.6
872,935 - MPMX19_05331 0.13 -1.6
873,168 + MPMX19_05331 0.22 -0.9
873,169 - MPMX19_05331 0.22 -0.9
873,169 - MPMX19_05331 0.22 +1.1
873,351 + MPMX19_05331 0.30 -0.4
873,351 + MPMX19_05331 0.30 -0.1
873,351 + MPMX19_05331 0.30 -0.6
873,351 + MPMX19_05331 0.30 -0.5
873,352 - MPMX19_05331 0.30 +0.2
873,352 - MPMX19_05331 0.30 +0.8
873,352 - MPMX19_05331 0.30 -1.9
873,352 - MPMX19_05331 0.30 +0.4
873,352 - MPMX19_05331 0.30 -0.4
873,360 + MPMX19_05331 0.30 -1.5
873,360 + MPMX19_05331 0.30 -0.9
873,360 + MPMX19_05331 0.30 +0.2
873,361 - MPMX19_05331 0.30 +0.5
873,361 - MPMX19_05331 0.30 -1.6
873,361 - MPMX19_05331 0.30 -0.5
873,361 - MPMX19_05331 0.30 -2.8

Or see this region's nucleotide sequence