Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05171

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05170 and MPMX19_05171 are separated by 618 nucleotidesMPMX19_05171 and MPMX19_05172 are separated by 140 nucleotides MPMX19_05170: MPMX19_05170 - Fe(3+) dicitrate transport ATP-binding protein FecE, at 671,959 to 672,783 _05170 MPMX19_05171: MPMX19_05171 - hypothetical protein, at 673,402 to 673,857 _05171 MPMX19_05172: MPMX19_05172 - Vitamin B12 transporter BtuB, at 673,998 to 676,199 _05172 Position (kb) 673 674Strain fitness (log2 ratio) -2 -1 0 1at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 673.053 kb on + strandat 673.054 kb on - strandat 673.092 kb on + strandat 673.092 kb on + strandat 673.092 kb on + strandat 673.092 kb on + strandat 673.092 kb on + strandat 673.092 kb on + strandat 673.093 kb on - strandat 673.093 kb on - strandat 673.093 kb on - strandat 673.581 kb on + strand, within MPMX19_05171at 673.942 kb on - strandat 673.992 kb on + strandat 673.992 kb on + strandat 673.992 kb on + strandat 673.992 kb on + strandat 673.993 kb on - strandat 673.993 kb on - strandat 673.993 kb on - strandat 673.993 kb on - strandat 673.993 kb on - strandat 673.993 kb on - strandat 673.993 kb on - strandat 673.993 kb on - strandat 674.198 kb on + strandat 674.198 kb on + strandat 674.198 kb on + strandat 674.198 kb on + strandat 674.198 kb on + strandat 674.198 kb on + strandat 674.199 kb on - strandat 674.199 kb on - strandat 674.199 kb on - strandat 674.199 kb on - strandat 674.199 kb on - strandat 674.199 kb on - strandat 674.271 kb on + strand, within MPMX19_05172at 674.537 kb on + strand, within MPMX19_05172at 674.537 kb on + strand, within MPMX19_05172at 674.537 kb on + strand, within MPMX19_05172at 674.537 kb on + strand, within MPMX19_05172at 674.537 kb on + strand, within MPMX19_05172at 674.538 kb on - strand, within MPMX19_05172at 674.538 kb on - strand, within MPMX19_05172at 674.563 kb on - strand, within MPMX19_05172at 674.563 kb on - strand, within MPMX19_05172at 674.634 kb on + strand, within MPMX19_05172at 674.634 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.664 kb on + strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.665 kb on - strand, within MPMX19_05172at 674.703 kb on + strand, within MPMX19_05172at 674.703 kb on + strand, within MPMX19_05172at 674.704 kb on - strand, within MPMX19_05172at 674.704 kb on - strand, within MPMX19_05172at 674.704 kb on - strand, within MPMX19_05172at 674.704 kb on - strand, within MPMX19_05172at 674.704 kb on - strand, within MPMX19_05172at 674.704 kb on - strand, within MPMX19_05172at 674.791 kb on - strand, within MPMX19_05172at 674.791 kb on - strand, within MPMX19_05172at 674.856 kb on + strand, within MPMX19_05172

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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672,652 + MPMX19_05170 0.84 +0.4
672,652 + MPMX19_05170 0.84 -0.1
672,652 + MPMX19_05170 0.84 -0.6
672,652 + MPMX19_05170 0.84 +0.2
672,652 + MPMX19_05170 0.84 -0.4
672,653 - MPMX19_05170 0.84 -1.3
672,653 - MPMX19_05170 0.84 -0.6
672,653 - MPMX19_05170 0.84 +1.2
672,653 - MPMX19_05170 0.84 -2.2
672,653 - MPMX19_05170 0.84 -1.5
672,653 - MPMX19_05170 0.84 -0.4
673,053 + +0.4
673,054 - -0.6
673,092 + -0.9
673,092 + -0.3
673,092 + -1.2
673,092 + -0.7
673,092 + -1.6
673,092 + -0.2
673,093 - -0.9
673,093 - -0.3
673,093 - +0.1
673,581 + MPMX19_05171 0.39 +0.2
673,942 - -0.4
673,992 + -1.1
673,992 + +0.3
673,992 + +0.4
673,992 + -0.2
673,993 - +1.6
673,993 - -1.4
673,993 - -2.7
673,993 - -0.9
673,993 - -1.9
673,993 - +0.1
673,993 - -0.3
673,993 - -2.1
674,198 + -0.2
674,198 + -0.8
674,198 + -1.1
674,198 + -0.8
674,198 + -1.0
674,198 + -0.7
674,199 - +0.6
674,199 - -0.9
674,199 - -0.9
674,199 - +0.1
674,199 - -1.3
674,199 - +0.7
674,271 + MPMX19_05172 0.12 +0.4
674,537 + MPMX19_05172 0.24 +0.5
674,537 + MPMX19_05172 0.24 +0.2
674,537 + MPMX19_05172 0.24 +1.4
674,537 + MPMX19_05172 0.24 -0.8
674,537 + MPMX19_05172 0.24 -1.8
674,538 - MPMX19_05172 0.25 -2.0
674,538 - MPMX19_05172 0.25 -0.9
674,563 - MPMX19_05172 0.26 +0.4
674,563 - MPMX19_05172 0.26 +0.4
674,634 + MPMX19_05172 0.29 -0.4
674,634 + MPMX19_05172 0.29 +1.0
674,664 + MPMX19_05172 0.30 -1.3
674,664 + MPMX19_05172 0.30 -1.0
674,664 + MPMX19_05172 0.30 +0.5
674,664 + MPMX19_05172 0.30 -1.4
674,664 + MPMX19_05172 0.30 -1.1
674,664 + MPMX19_05172 0.30 -0.2
674,664 + MPMX19_05172 0.30 -0.2
674,664 + MPMX19_05172 0.30 -1.0
674,664 + MPMX19_05172 0.30 -0.2
674,664 + MPMX19_05172 0.30 -0.9
674,664 + MPMX19_05172 0.30 +0.1
674,665 - MPMX19_05172 0.30 -0.2
674,665 - MPMX19_05172 0.30 -1.3
674,665 - MPMX19_05172 0.30 -0.9
674,665 - MPMX19_05172 0.30 -2.4
674,665 - MPMX19_05172 0.30 +0.4
674,665 - MPMX19_05172 0.30 -0.8
674,665 - MPMX19_05172 0.30 -1.4
674,703 + MPMX19_05172 0.32 -0.8
674,703 + MPMX19_05172 0.32 -1.5
674,704 - MPMX19_05172 0.32 +1.1
674,704 - MPMX19_05172 0.32 -0.6
674,704 - MPMX19_05172 0.32 +0.4
674,704 - MPMX19_05172 0.32 -0.2
674,704 - MPMX19_05172 0.32 -0.2
674,704 - MPMX19_05172 0.32 -2.3
674,791 - MPMX19_05172 0.36 -0.9
674,791 - MPMX19_05172 0.36 -1.7
674,856 + MPMX19_05172 0.39 -1.2

Or see this region's nucleotide sequence