Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05062

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05060 and MPMX19_05061 are separated by 58 nucleotidesMPMX19_05061 and MPMX19_05062 are separated by 336 nucleotidesMPMX19_05062 and MPMX19_05063 are separated by 145 nucleotides MPMX19_05060: MPMX19_05060 - hypothetical protein, at 544,450 to 544,827 _05060 MPMX19_05061: MPMX19_05061 - hypothetical protein, at 544,886 to 545,275 _05061 MPMX19_05062: MPMX19_05062 - Sulfur carrier protein TusA, at 545,612 to 545,839 _05062 MPMX19_05063: MPMX19_05063 - Histone deacetylase-like amidohydrolase, at 545,985 to 546,974 _05063 Position (kb) 545 546Strain fitness (log2 ratio) -2 -1 0 1 2 3at 544.641 kb on - strand, within MPMX19_05060at 544.641 kb on - strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.649 kb on + strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.650 kb on - strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.711 kb on + strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.712 kb on - strand, within MPMX19_05060at 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.839 kb on + strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.840 kb on - strandat 544.992 kb on + strand, within MPMX19_05061at 544.992 kb on + strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 544.993 kb on - strand, within MPMX19_05061at 545.046 kb on + strand, within MPMX19_05061at 545.046 kb on + strand, within MPMX19_05061at 545.047 kb on - strand, within MPMX19_05061at 545.047 kb on - strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.049 kb on + strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.050 kb on - strand, within MPMX19_05061at 545.281 kb on + strandat 545.281 kb on + strandat 545.356 kb on + strandat 545.356 kb on + strandat 545.356 kb on + strandat 545.361 kb on + strandat 545.361 kb on + strandat 545.364 kb on + strandat 545.365 kb on - strandat 545.366 kb on + strandat 545.367 kb on - strandat 545.367 kb on - strandat 545.373 kb on - strandat 545.439 kb on + strandat 545.440 kb on - strandat 545.440 kb on - strandat 545.511 kb on + strandat 545.511 kb on + strandat 545.512 kb on - strandat 545.599 kb on + strandat 545.632 kb on + strandat 545.632 kb on + strandat 545.632 kb on + strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.633 kb on - strandat 545.704 kb on + strand, within MPMX19_05062at 545.884 kb on - strandat 545.884 kb on - strandat 545.884 kb on - strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.960 kb on + strandat 545.961 kb on - strandat 545.961 kb on - strandat 545.970 kb on - strandat 545.970 kb on - strandat 545.970 kb on - strandat 546.029 kb on - strandat 546.029 kb on - strandat 546.062 kb on + strandat 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on + strand, within MPMX19_05063at 546.585 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.586 kb on - strand, within MPMX19_05063at 546.612 kb on + strand, within MPMX19_05063at 546.612 kb on + strand, within MPMX19_05063at 546.613 kb on - strand, within MPMX19_05063at 546.613 kb on - strand, within MPMX19_05063at 546.649 kb on - strand, within MPMX19_05063

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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544,641 - MPMX19_05060 0.51 +0.5
544,641 - MPMX19_05060 0.51 -0.3
544,649 + MPMX19_05060 0.53 -0.5
544,649 + MPMX19_05060 0.53 +2.0
544,649 + MPMX19_05060 0.53 -1.5
544,649 + MPMX19_05060 0.53 -0.1
544,649 + MPMX19_05060 0.53 -0.7
544,650 - MPMX19_05060 0.53 -1.5
544,650 - MPMX19_05060 0.53 -0.1
544,650 - MPMX19_05060 0.53 +1.9
544,650 - MPMX19_05060 0.53 +1.0
544,650 - MPMX19_05060 0.53 -0.9
544,650 - MPMX19_05060 0.53 -0.3
544,650 - MPMX19_05060 0.53 -0.9
544,711 + MPMX19_05060 0.69 -1.4
544,711 + MPMX19_05060 0.69 -0.2
544,711 + MPMX19_05060 0.69 +0.1
544,711 + MPMX19_05060 0.69 -0.1
544,711 + MPMX19_05060 0.69 -1.5
544,711 + MPMX19_05060 0.69 +0.9
544,712 - MPMX19_05060 0.69 +0.5
544,712 - MPMX19_05060 0.69 +0.5
544,712 - MPMX19_05060 0.69 -1.9
544,712 - MPMX19_05060 0.69 -1.0
544,712 - MPMX19_05060 0.69 -1.3
544,839 + -1.2
544,839 + -1.1
544,839 + -1.9
544,839 + +1.0
544,839 + -1.7
544,839 + +0.1
544,839 + -1.1
544,839 + -1.2
544,840 - +0.7
544,840 - -0.8
544,840 - -0.3
544,840 - -0.6
544,840 - -0.7
544,840 - -0.8
544,992 + MPMX19_05061 0.27 -0.6
544,992 + MPMX19_05061 0.27 -1.1
544,993 - MPMX19_05061 0.27 -2.1
544,993 - MPMX19_05061 0.27 -0.9
544,993 - MPMX19_05061 0.27 +1.0
544,993 - MPMX19_05061 0.27 +0.5
544,993 - MPMX19_05061 0.27 -2.7
545,046 + MPMX19_05061 0.41 +1.8
545,046 + MPMX19_05061 0.41 +0.1
545,047 - MPMX19_05061 0.41 -0.5
545,047 - MPMX19_05061 0.41 -1.0
545,049 + MPMX19_05061 0.42 -1.8
545,049 + MPMX19_05061 0.42 -0.7
545,049 + MPMX19_05061 0.42 -0.7
545,049 + MPMX19_05061 0.42 +0.7
545,049 + MPMX19_05061 0.42 +0.0
545,049 + MPMX19_05061 0.42 +0.6
545,049 + MPMX19_05061 0.42 +0.1
545,049 + MPMX19_05061 0.42 -0.9
545,049 + MPMX19_05061 0.42 -0.5
545,049 + MPMX19_05061 0.42 -1.0
545,049 + MPMX19_05061 0.42 -0.7
545,049 + MPMX19_05061 0.42 -2.3
545,049 + MPMX19_05061 0.42 -0.3
545,049 + MPMX19_05061 0.42 -1.5
545,049 + MPMX19_05061 0.42 -0.0
545,049 + MPMX19_05061 0.42 -1.4
545,049 + MPMX19_05061 0.42 +0.1
545,049 + MPMX19_05061 0.42 +0.0
545,050 - MPMX19_05061 0.42 +0.0
545,050 - MPMX19_05061 0.42 -1.1
545,050 - MPMX19_05061 0.42 -1.1
545,050 - MPMX19_05061 0.42 +0.7
545,050 - MPMX19_05061 0.42 -1.3
545,050 - MPMX19_05061 0.42 +0.3
545,050 - MPMX19_05061 0.42 -0.4
545,050 - MPMX19_05061 0.42 -1.9
545,050 - MPMX19_05061 0.42 +2.0
545,050 - MPMX19_05061 0.42 -1.2
545,281 + -0.8
545,281 + -0.3
545,356 + +0.1
545,356 + -2.3
545,356 + -1.9
545,361 + -0.6
545,361 + -1.0
545,364 + +0.9
545,365 - -1.1
545,366 + -0.5
545,367 - -0.8
545,367 - -0.2
545,373 - +0.3
545,439 + -0.5
545,440 - -0.3
545,440 - +0.8
545,511 + +0.9
545,511 + -0.7
545,512 - -0.8
545,599 + +0.7
545,632 + +1.0
545,632 + +0.1
545,632 + -0.3
545,633 - -0.2
545,633 - +1.3
545,633 - -0.9
545,633 - -1.5
545,704 + MPMX19_05062 0.40 +0.3
545,884 - +0.0
545,884 - -0.1
545,884 - -0.5
545,960 + -0.7
545,960 + -0.1
545,960 + -0.8
545,960 + +1.2
545,961 - -0.1
545,961 - +0.9
545,970 - -0.4
545,970 - -1.0
545,970 - -1.5
546,029 - +0.9
546,029 - +1.1
546,062 + +0.1
546,585 + MPMX19_05063 0.61 -0.8
546,585 + MPMX19_05063 0.61 -0.1
546,585 + MPMX19_05063 0.61 -0.1
546,585 + MPMX19_05063 0.61 +0.2
546,585 + MPMX19_05063 0.61 -1.1
546,585 + MPMX19_05063 0.61 -1.1
546,585 + MPMX19_05063 0.61 +0.5
546,585 + MPMX19_05063 0.61 +1.1
546,585 + MPMX19_05063 0.61 +0.7
546,585 + MPMX19_05063 0.61 -0.9
546,585 + MPMX19_05063 0.61 +2.5
546,585 - MPMX19_05063 0.61 -0.5
546,586 - MPMX19_05063 0.61 +0.6
546,586 - MPMX19_05063 0.61 -1.2
546,586 - MPMX19_05063 0.61 +0.0
546,586 - MPMX19_05063 0.61 +0.6
546,586 - MPMX19_05063 0.61 +2.9
546,586 - MPMX19_05063 0.61 -1.1
546,586 - MPMX19_05063 0.61 +0.5
546,586 - MPMX19_05063 0.61 -0.1
546,612 + MPMX19_05063 0.63 -0.3
546,612 + MPMX19_05063 0.63 -0.3
546,613 - MPMX19_05063 0.63 -0.7
546,613 - MPMX19_05063 0.63 -0.1
546,649 - MPMX19_05063 0.67 -0.1

Or see this region's nucleotide sequence