Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04815

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04814 and MPMX19_04815 are separated by 147 nucleotidesMPMX19_04815 and MPMX19_04816 are separated by 87 nucleotides MPMX19_04814: MPMX19_04814 - ATP phosphoribosyltransferase regulatory subunit, at 218,238 to 219,392 _04814 MPMX19_04815: MPMX19_04815 - Adenylosuccinate synthetase, at 219,540 to 220,832 _04815 MPMX19_04816: MPMX19_04816 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 220,920 to 221,624 _04816 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1at 220.972 kb on + strandat 220.972 kb on + strandat 220.972 kb on + strandat 220.972 kb on + strandat 220.973 kb on - strandat 220.973 kb on - strandat 220.973 kb on - strandat 220.973 kb on - strandat 220.973 kb on - strandat 221.047 kb on - strand, within MPMX19_04816at 221.131 kb on + strand, within MPMX19_04816at 221.131 kb on + strand, within MPMX19_04816at 221.131 kb on + strand, within MPMX19_04816at 221.131 kb on + strand, within MPMX19_04816at 221.131 kb on + strand, within MPMX19_04816at 221.132 kb on - strand, within MPMX19_04816at 221.132 kb on - strand, within MPMX19_04816at 221.132 kb on - strand, within MPMX19_04816at 221.132 kb on - strand, within MPMX19_04816at 221.132 kb on - strand, within MPMX19_04816at 221.132 kb on - strand, within MPMX19_04816at 221.156 kb on - strand, within MPMX19_04816at 221.156 kb on - strand, within MPMX19_04816at 221.156 kb on - strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.308 kb on + strand, within MPMX19_04816at 221.309 kb on - strand, within MPMX19_04816at 221.309 kb on - strand, within MPMX19_04816at 221.309 kb on - strand, within MPMX19_04816at 221.659 kb on + strandat 221.659 kb on + strandat 221.659 kb on + strandat 221.659 kb on + strandat 221.660 kb on - strandat 221.660 kb on - strandat 221.660 kb on - strandat 221.660 kb on - strandat 221.660 kb on - strandat 221.660 kb on - strandat 221.660 kb on - strandat 221.733 kb on - strandat 221.816 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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220,972 + +0.1
220,972 + +1.0
220,972 + -1.0
220,972 + +0.3
220,973 - -0.1
220,973 - +0.6
220,973 - -1.4
220,973 - +0.1
220,973 - -1.2
221,047 - MPMX19_04816 0.18 +0.5
221,131 + MPMX19_04816 0.30 -1.1
221,131 + MPMX19_04816 0.30 -0.9
221,131 + MPMX19_04816 0.30 -0.3
221,131 + MPMX19_04816 0.30 -0.5
221,131 + MPMX19_04816 0.30 -0.1
221,132 - MPMX19_04816 0.30 +0.1
221,132 - MPMX19_04816 0.30 -0.9
221,132 - MPMX19_04816 0.30 -1.7
221,132 - MPMX19_04816 0.30 -0.7
221,132 - MPMX19_04816 0.30 -2.0
221,132 - MPMX19_04816 0.30 -1.6
221,156 - MPMX19_04816 0.33 -2.2
221,156 - MPMX19_04816 0.33 -1.0
221,156 - MPMX19_04816 0.33 -2.5
221,308 + MPMX19_04816 0.55 -0.9
221,308 + MPMX19_04816 0.55 +0.1
221,308 + MPMX19_04816 0.55 -0.7
221,308 + MPMX19_04816 0.55 +1.0
221,308 + MPMX19_04816 0.55 +0.0
221,308 + MPMX19_04816 0.55 -0.9
221,308 + MPMX19_04816 0.55 -0.5
221,308 + MPMX19_04816 0.55 -1.9
221,308 + MPMX19_04816 0.55 -0.1
221,308 + MPMX19_04816 0.55 -0.1
221,308 + MPMX19_04816 0.55 -0.2
221,308 + MPMX19_04816 0.55 +0.1
221,308 + MPMX19_04816 0.55 +0.1
221,309 - MPMX19_04816 0.55 +0.2
221,309 - MPMX19_04816 0.55 -0.7
221,309 - MPMX19_04816 0.55 -1.2
221,659 + -1.4
221,659 + +0.2
221,659 + -0.5
221,659 + -0.4
221,660 - -1.0
221,660 - +0.1
221,660 - -1.1
221,660 - -1.8
221,660 - -0.5
221,660 - -0.2
221,660 - -1.0
221,733 - -0.1
221,816 + +0.7

Or see this region's nucleotide sequence