Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04716

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04714 and MPMX19_04715 are separated by 54 nucleotidesMPMX19_04715 and MPMX19_04716 overlap by 4 nucleotidesMPMX19_04716 and MPMX19_04717 are separated by 135 nucleotides MPMX19_04714: MPMX19_04714 - L-cystine-binding protein FliY, at 101,418 to 102,164 _04714 MPMX19_04715: MPMX19_04715 - hypothetical protein, at 102,219 to 102,794 _04715 MPMX19_04716: MPMX19_04716 - Vitamin B12 import ATP-binding protein BtuD, at 102,791 to 104,533 _04716 MPMX19_04717: MPMX19_04717 - hypothetical protein, at 104,669 to 105,559 _04717 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2at 101.796 kb on + strand, within MPMX19_04714at 101.797 kb on - strand, within MPMX19_04714at 101.853 kb on + strand, within MPMX19_04714at 101.854 kb on - strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.979 kb on + strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 101.980 kb on - strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.051 kb on + strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.052 kb on - strand, within MPMX19_04714at 102.162 kb on + strandat 102.331 kb on + strand, within MPMX19_04715at 102.331 kb on + strand, within MPMX19_04715at 102.331 kb on + strand, within MPMX19_04715at 102.331 kb on + strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.332 kb on - strand, within MPMX19_04715at 102.438 kb on + strand, within MPMX19_04715at 102.438 kb on + strand, within MPMX19_04715at 102.439 kb on - strand, within MPMX19_04715at 102.439 kb on - strand, within MPMX19_04715at 102.514 kb on + strand, within MPMX19_04715at 102.514 kb on + strand, within MPMX19_04715at 102.514 kb on + strand, within MPMX19_04715at 102.515 kb on - strand, within MPMX19_04715at 102.515 kb on - strand, within MPMX19_04715at 102.515 kb on - strand, within MPMX19_04715at 102.602 kb on + strand, within MPMX19_04715at 102.603 kb on - strand, within MPMX19_04715at 102.692 kb on + strand, within MPMX19_04715at 102.693 kb on - strand, within MPMX19_04715at 102.842 kb on + strandat 102.843 kb on - strandat 102.843 kb on - strandat 104.150 kb on - strand, within MPMX19_04716at 104.427 kb on + strandat 104.427 kb on + strandat 104.427 kb on + strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.721 kb on + strandat 104.721 kb on + strandat 104.721 kb on + strandat 104.722 kb on - strandat 104.722 kb on - strandat 104.722 kb on - strandat 104.742 kb on + strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.817 kb on + strand, within MPMX19_04717at 104.818 kb on - strand, within MPMX19_04717at 104.838 kb on + strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.908 kb on - strand, within MPMX19_04717at 104.908 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.265 kb on - strand, within MPMX19_04717at 105.334 kb on - strand, within MPMX19_04717at 105.334 kb on - strand, within MPMX19_04717at 105.372 kb on + strand, within MPMX19_04717at 105.372 kb on + strand, within MPMX19_04717at 105.372 kb on + strand, within MPMX19_04717at 105.373 kb on - strand, within MPMX19_04717at 105.373 kb on - strand, within MPMX19_04717

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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101,796 + MPMX19_04714 0.51 +0.1
101,797 - MPMX19_04714 0.51 -1.5
101,853 + MPMX19_04714 0.58 +0.3
101,854 - MPMX19_04714 0.58 -0.9
101,979 + MPMX19_04714 0.75 +0.8
101,979 + MPMX19_04714 0.75 -1.6
101,979 + MPMX19_04714 0.75 -1.7
101,979 + MPMX19_04714 0.75 -1.7
101,979 + MPMX19_04714 0.75 -1.5
101,979 + MPMX19_04714 0.75 -0.2
101,980 - MPMX19_04714 0.75 -1.6
101,980 - MPMX19_04714 0.75 -1.0
101,980 - MPMX19_04714 0.75 -1.6
101,980 - MPMX19_04714 0.75 +0.2
101,980 - MPMX19_04714 0.75 +0.1
102,051 + MPMX19_04714 0.85 -0.4
102,051 + MPMX19_04714 0.85 -0.9
102,051 + MPMX19_04714 0.85 -1.6
102,051 + MPMX19_04714 0.85 -0.7
102,051 + MPMX19_04714 0.85 -1.3
102,051 + MPMX19_04714 0.85 +0.4
102,051 + MPMX19_04714 0.85 +0.1
102,052 - MPMX19_04714 0.85 -1.0
102,052 - MPMX19_04714 0.85 +0.4
102,052 - MPMX19_04714 0.85 -0.4
102,052 - MPMX19_04714 0.85 -0.4
102,052 - MPMX19_04714 0.85 +1.3
102,052 - MPMX19_04714 0.85 +0.1
102,052 - MPMX19_04714 0.85 -0.7
102,162 + -0.5
102,331 + MPMX19_04715 0.19 -1.7
102,331 + MPMX19_04715 0.19 +0.2
102,331 + MPMX19_04715 0.19 -0.3
102,331 + MPMX19_04715 0.19 -0.4
102,332 - MPMX19_04715 0.20 -0.3
102,332 - MPMX19_04715 0.20 +0.7
102,332 - MPMX19_04715 0.20 -0.9
102,332 - MPMX19_04715 0.20 -0.4
102,332 - MPMX19_04715 0.20 -1.2
102,332 - MPMX19_04715 0.20 -1.2
102,332 - MPMX19_04715 0.20 -2.1
102,332 - MPMX19_04715 0.20 +1.8
102,438 + MPMX19_04715 0.38 -1.2
102,438 + MPMX19_04715 0.38 -0.2
102,439 - MPMX19_04715 0.38 -0.2
102,439 - MPMX19_04715 0.38 +0.3
102,514 + MPMX19_04715 0.51 -0.9
102,514 + MPMX19_04715 0.51 -1.2
102,514 + MPMX19_04715 0.51 +0.4
102,515 - MPMX19_04715 0.51 +0.6
102,515 - MPMX19_04715 0.51 -0.6
102,515 - MPMX19_04715 0.51 +0.6
102,602 + MPMX19_04715 0.66 -0.3
102,603 - MPMX19_04715 0.67 -0.2
102,692 + MPMX19_04715 0.82 -0.7
102,693 - MPMX19_04715 0.82 -0.3
102,842 + -1.2
102,843 - -0.4
102,843 - -0.2
104,150 - MPMX19_04716 0.78 -0.2
104,427 + +0.4
104,427 + +0.2
104,427 + -0.1
104,428 - -0.6
104,428 - -0.7
104,428 - -0.9
104,428 - +0.3
104,428 - -0.8
104,428 - -0.5
104,428 - -1.0
104,428 - -0.9
104,428 - +0.4
104,721 + -0.2
104,721 + -0.6
104,721 + -0.8
104,722 - -1.2
104,722 - -1.4
104,722 - +0.4
104,742 + -0.8
104,743 - -1.7
104,743 - -0.6
104,743 - -2.1
104,743 - +0.4
104,743 - -0.2
104,817 + MPMX19_04717 0.17 +0.0
104,818 - MPMX19_04717 0.17 -0.4
104,838 + MPMX19_04717 0.19 -0.7
104,839 - MPMX19_04717 0.19 -0.3
104,839 - MPMX19_04717 0.19 -0.7
104,839 - MPMX19_04717 0.19 -0.4
104,839 - MPMX19_04717 0.19 -1.6
104,839 - MPMX19_04717 0.19 +0.1
104,908 - MPMX19_04717 0.27 -1.5
104,908 - MPMX19_04717 0.27 -0.5
105,049 - MPMX19_04717 0.43 -1.3
105,049 - MPMX19_04717 0.43 -0.2
105,049 - MPMX19_04717 0.43 -1.4
105,049 - MPMX19_04717 0.43 -1.4
105,183 + MPMX19_04717 0.58 -0.2
105,183 + MPMX19_04717 0.58 -0.4
105,183 + MPMX19_04717 0.58 +1.0
105,183 + MPMX19_04717 0.58 -1.6
105,183 + MPMX19_04717 0.58 +0.8
105,183 + MPMX19_04717 0.58 -0.2
105,183 + MPMX19_04717 0.58 -0.9
105,183 + MPMX19_04717 0.58 +0.8
105,183 + MPMX19_04717 0.58 -0.2
105,183 + MPMX19_04717 0.58 -0.4
105,183 + MPMX19_04717 0.58 -1.1
105,184 - MPMX19_04717 0.58 -0.2
105,184 - MPMX19_04717 0.58 -1.2
105,184 - MPMX19_04717 0.58 -0.4
105,184 - MPMX19_04717 0.58 -0.7
105,184 - MPMX19_04717 0.58 -0.9
105,184 - MPMX19_04717 0.58 +0.1
105,184 - MPMX19_04717 0.58 +0.6
105,184 - MPMX19_04717 0.58 -0.9
105,184 - MPMX19_04717 0.58 -0.9
105,184 - MPMX19_04717 0.58 -0.4
105,219 + MPMX19_04717 0.62 +0.8
105,219 + MPMX19_04717 0.62 +1.0
105,219 + MPMX19_04717 0.62 -1.3
105,219 + MPMX19_04717 0.62 +0.6
105,220 - MPMX19_04717 0.62 +0.2
105,220 - MPMX19_04717 0.62 +0.4
105,220 - MPMX19_04717 0.62 -1.2
105,220 - MPMX19_04717 0.62 +0.4
105,220 - MPMX19_04717 0.62 -0.4
105,265 - MPMX19_04717 0.67 -1.5
105,334 - MPMX19_04717 0.75 +0.8
105,334 - MPMX19_04717 0.75 -0.4
105,372 + MPMX19_04717 0.79 -0.7
105,372 + MPMX19_04717 0.79 -0.5
105,372 + MPMX19_04717 0.79 -1.1
105,373 - MPMX19_04717 0.79 -0.8
105,373 - MPMX19_04717 0.79 -0.2

Or see this region's nucleotide sequence