Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04553

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04552 and MPMX19_04553 are separated by 47 nucleotidesMPMX19_04553 and MPMX19_04554 are separated by 229 nucleotides MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961 _04552 MPMX19_04553: MPMX19_04553 - hypothetical protein, at 930,009 to 930,425 _04553 MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371 _04554 Position (kb) 930 931Strain fitness (log2 ratio) -3 -2 -1 0 1at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.009 kb on - strand, within MPMX19_04552at 929.162 kb on - strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.320 kb on + strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.321 kb on - strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.341 kb on + strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.342 kb on - strand, within MPMX19_04552at 929.504 kb on - strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.741 kb on - strand, within MPMX19_04552at 929.741 kb on - strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.806 kb on + strand, within MPMX19_04552at 930.238 kb on - strand, within MPMX19_04553at 930.238 kb on - strand, within MPMX19_04553at 930.276 kb on + strand, within MPMX19_04553at 930.276 kb on + strand, within MPMX19_04553at 930.277 kb on - strand, within MPMX19_04553at 930.563 kb on + strandat 930.563 kb on + strandat 930.564 kb on - strandat 930.564 kb on - strandat 930.564 kb on - strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.657 kb on - strandat 930.657 kb on - strandat 930.657 kb on - strandat 930.701 kb on + strandat 930.701 kb on + strandat 930.701 kb on + strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.766 kb on + strand, within MPMX19_04554at 930.766 kb on + strand, within MPMX19_04554at 930.766 kb on + strand, within MPMX19_04554at 930.767 kb on - strand, within MPMX19_04554at 930.767 kb on - strand, within MPMX19_04554at 930.860 kb on + strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.932 kb on - strand, within MPMX19_04554at 930.996 kb on + strand, within MPMX19_04554at 930.996 kb on + strand, within MPMX19_04554at 930.996 kb on + strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 931.310 kb on + strandat 931.310 kb on + strandat 931.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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929,009 - MPMX19_04552 0.33 -0.2
929,009 - MPMX19_04552 0.33 -0.6
929,009 - MPMX19_04552 0.33 +0.0
929,009 - MPMX19_04552 0.33 +1.3
929,009 - MPMX19_04552 0.33 -0.2
929,162 - MPMX19_04552 0.44 +0.2
929,320 + MPMX19_04552 0.55 -0.4
929,320 + MPMX19_04552 0.55 -1.2
929,320 + MPMX19_04552 0.55 -1.0
929,320 + MPMX19_04552 0.55 -0.6
929,320 + MPMX19_04552 0.55 -1.0
929,321 - MPMX19_04552 0.55 -1.2
929,321 - MPMX19_04552 0.55 +1.0
929,321 - MPMX19_04552 0.55 -0.7
929,341 + MPMX19_04552 0.56 -0.3
929,341 + MPMX19_04552 0.56 -0.9
929,341 + MPMX19_04552 0.56 -0.6
929,341 + MPMX19_04552 0.56 +0.3
929,341 + MPMX19_04552 0.56 -1.1
929,341 + MPMX19_04552 0.56 +0.3
929,341 + MPMX19_04552 0.56 -0.4
929,341 + MPMX19_04552 0.56 -1.1
929,341 + MPMX19_04552 0.56 +0.8
929,341 + MPMX19_04552 0.56 -0.8
929,341 + MPMX19_04552 0.56 -1.1
929,341 + MPMX19_04552 0.56 -1.8
929,341 + MPMX19_04552 0.56 -0.9
929,341 + MPMX19_04552 0.56 +0.1
929,341 + MPMX19_04552 0.56 -1.7
929,341 + MPMX19_04552 0.56 -0.0
929,342 - MPMX19_04552 0.56 -0.5
929,342 - MPMX19_04552 0.56 -0.7
929,342 - MPMX19_04552 0.56 -0.2
929,342 - MPMX19_04552 0.56 -0.5
929,342 - MPMX19_04552 0.56 -0.8
929,342 - MPMX19_04552 0.56 -1.4
929,342 - MPMX19_04552 0.56 -1.7
929,342 - MPMX19_04552 0.56 -0.8
929,342 - MPMX19_04552 0.56 +0.0
929,342 - MPMX19_04552 0.56 +0.0
929,342 - MPMX19_04552 0.56 -0.5
929,342 - MPMX19_04552 0.56 -0.8
929,342 - MPMX19_04552 0.56 -1.2
929,342 - MPMX19_04552 0.56 -0.0
929,342 - MPMX19_04552 0.56 -0.7
929,342 - MPMX19_04552 0.56 -2.2
929,342 - MPMX19_04552 0.56 -1.1
929,342 - MPMX19_04552 0.56 -0.5
929,342 - MPMX19_04552 0.56 +1.3
929,504 - MPMX19_04552 0.68 -0.2
929,680 + MPMX19_04552 0.80 -1.1
929,680 + MPMX19_04552 0.80 +0.3
929,680 + MPMX19_04552 0.80 -2.4
929,680 + MPMX19_04552 0.80 -1.9
929,680 + MPMX19_04552 0.80 +0.5
929,681 - MPMX19_04552 0.80 -1.1
929,681 - MPMX19_04552 0.80 -2.2
929,681 - MPMX19_04552 0.80 -0.8
929,681 - MPMX19_04552 0.80 -0.1
929,681 - MPMX19_04552 0.80 -2.9
929,681 - MPMX19_04552 0.80 -1.0
929,681 - MPMX19_04552 0.80 -0.5
929,681 - MPMX19_04552 0.80 -2.4
929,740 + MPMX19_04552 0.84 -1.2
929,740 + MPMX19_04552 0.84 -1.8
929,740 + MPMX19_04552 0.84 -0.2
929,740 + MPMX19_04552 0.84 +0.3
929,740 + MPMX19_04552 0.84 -1.0
929,741 - MPMX19_04552 0.84 +0.2
929,741 - MPMX19_04552 0.84 +0.0
929,797 + MPMX19_04552 0.88 -0.5
929,797 + MPMX19_04552 0.88 -0.4
929,797 + MPMX19_04552 0.88 +0.1
929,797 + MPMX19_04552 0.88 +1.3
929,798 - MPMX19_04552 0.88 -0.5
929,798 - MPMX19_04552 0.88 -1.0
929,798 - MPMX19_04552 0.88 -2.4
929,798 - MPMX19_04552 0.88 -2.2
929,806 + MPMX19_04552 0.89 -0.2
930,238 - MPMX19_04553 0.55 -0.2
930,238 - MPMX19_04553 0.55 +0.2
930,276 + MPMX19_04553 0.64 +0.6
930,276 + MPMX19_04553 0.64 +0.5
930,277 - MPMX19_04553 0.64 +0.6
930,563 + -2.4
930,563 + -1.3
930,564 - -0.1
930,564 - -0.4
930,564 - -0.1
930,656 + -1.2
930,656 + +1.2
930,656 + -0.5
930,656 + -0.2
930,656 + +1.6
930,657 - -0.7
930,657 - -0.8
930,657 - -0.6
930,701 + +0.5
930,701 + -0.7
930,701 + +0.1
930,702 - -0.7
930,702 - -0.2
930,702 - -0.4
930,766 + MPMX19_04554 0.15 -2.0
930,766 + MPMX19_04554 0.15 +0.2
930,766 + MPMX19_04554 0.15 -0.1
930,767 - MPMX19_04554 0.16 -0.7
930,767 - MPMX19_04554 0.16 +0.8
930,860 + MPMX19_04554 0.29 +0.5
930,861 - MPMX19_04554 0.29 +0.3
930,861 - MPMX19_04554 0.29 -1.1
930,861 - MPMX19_04554 0.29 -0.5
930,861 - MPMX19_04554 0.29 -0.7
930,932 - MPMX19_04554 0.39 -1.0
930,996 + MPMX19_04554 0.48 +1.3
930,996 + MPMX19_04554 0.48 -0.2
930,996 + MPMX19_04554 0.48 -1.0
930,997 - MPMX19_04554 0.48 +0.3
930,997 - MPMX19_04554 0.48 -0.4
930,997 - MPMX19_04554 0.48 -0.2
930,997 - MPMX19_04554 0.48 -0.2
930,997 - MPMX19_04554 0.48 +1.6
930,997 - MPMX19_04554 0.48 +1.3
931,310 + -1.0
931,310 + -0.3
931,310 + +0.0

Or see this region's nucleotide sequence