Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04538 and MPMX19_04539 are separated by 92 nucleotides MPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides MPMX19_04540 and MPMX19_04541 overlap by 17 nucleotides
MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474
_04538
MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466
_04539
MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358
_04540
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.671 kb on + strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.672 kb on - strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.704 kb on + strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.705 kb on - strand, within MPMX19_04538 at 911.836 kb on + strand, within MPMX19_04538 at 911.837 kb on - strand, within MPMX19_04538 at 911.884 kb on + strand, within MPMX19_04538 at 911.899 kb on + strand, within MPMX19_04538 at 911.980 kb on + strand, within MPMX19_04538 at 911.981 kb on - strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.031 kb on + strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.032 kb on - strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.115 kb on + strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.116 kb on - strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.184 kb on + strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.185 kb on - strand, within MPMX19_04538 at 912.220 kb on + strand, within MPMX19_04538 at 912.220 kb on + strand, within MPMX19_04538 at 912.265 kb on + strand, within MPMX19_04538 at 912.265 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.271 kb on + strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.272 kb on - strand, within MPMX19_04538 at 912.364 kb on + strand at 912.364 kb on + strand at 912.364 kb on + strand at 912.365 kb on - strand at 912.365 kb on - strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.424 kb on + strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.425 kb on - strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.439 kb on + strand at 912.440 kb on - strand at 912.440 kb on - strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.472 kb on + strand at 912.473 kb on - strand at 912.473 kb on - strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.559 kb on + strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.560 kb on - strand at 912.577 kb on + strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.578 kb on - strand at 912.642 kb on + strand at 912.642 kb on + strand at 912.642 kb on + strand at 913.362 kb on + strand, within MPMX19_04539 at 913.362 kb on + strand, within MPMX19_04539 at 913.363 kb on - strand, within MPMX19_04539 at 913.423 kb on - strand at 913.555 kb on - strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.715 kb on - strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.195 kb on - strand, within MPMX19_04540
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 911,671 + MPMX19_04538 0.29 -0.3 911,671 + MPMX19_04538 0.29 -0.8 911,671 + MPMX19_04538 0.29 +0.3 911,671 + MPMX19_04538 0.29 +0.1 911,671 + MPMX19_04538 0.29 +0.9 911,671 + MPMX19_04538 0.29 -0.8 911,671 + MPMX19_04538 0.29 -1.5 911,671 + MPMX19_04538 0.29 +1.0 911,671 + MPMX19_04538 0.29 -1.1 911,671 + MPMX19_04538 0.29 -0.2 911,672 - MPMX19_04538 0.29 -0.8 911,672 - MPMX19_04538 0.29 +0.5 911,672 - MPMX19_04538 0.29 -0.5 911,672 - MPMX19_04538 0.29 -2.2 911,672 - MPMX19_04538 0.29 -1.0 911,704 + MPMX19_04538 0.32 -1.1 911,704 + MPMX19_04538 0.32 +2.3 911,704 + MPMX19_04538 0.32 +0.5 911,705 - MPMX19_04538 0.32 -0.5 911,705 - MPMX19_04538 0.32 +0.6 911,705 - MPMX19_04538 0.32 -0.2 911,705 - MPMX19_04538 0.32 -2.3 911,836 + MPMX19_04538 0.44 -1.4 911,837 - MPMX19_04538 0.44 -1.6 911,884 + MPMX19_04538 0.48 +0.2 911,899 + MPMX19_04538 0.49 +0.2 911,980 + MPMX19_04538 0.56 -1.0 911,981 - MPMX19_04538 0.56 -0.2 912,031 + MPMX19_04538 0.61 +0.0 912,031 + MPMX19_04538 0.61 -0.7 912,031 + MPMX19_04538 0.61 -1.4 912,031 + MPMX19_04538 0.61 +0.0 912,031 + MPMX19_04538 0.61 -0.5 912,031 + MPMX19_04538 0.61 +0.8 912,032 - MPMX19_04538 0.61 -0.2 912,032 - MPMX19_04538 0.61 +2.3 912,032 - MPMX19_04538 0.61 +0.3 912,032 - MPMX19_04538 0.61 -0.5 912,032 - MPMX19_04538 0.61 +0.6 912,115 + MPMX19_04538 0.68 -0.7 912,115 + MPMX19_04538 0.68 +0.6 912,115 + MPMX19_04538 0.68 +0.4 912,115 + MPMX19_04538 0.68 -0.2 912,115 + MPMX19_04538 0.68 -1.1 912,115 + MPMX19_04538 0.68 -0.6 912,115 + MPMX19_04538 0.68 +0.0 912,115 + MPMX19_04538 0.68 -0.4 912,115 + MPMX19_04538 0.68 -0.8 912,115 + MPMX19_04538 0.68 -0.7 912,115 + MPMX19_04538 0.68 -0.2 912,115 + MPMX19_04538 0.68 -1.2 912,115 + MPMX19_04538 0.68 +0.1 912,115 + MPMX19_04538 0.68 +0.2 912,116 - MPMX19_04538 0.68 -1.5 912,116 - MPMX19_04538 0.68 -0.5 912,116 - MPMX19_04538 0.68 +0.2 912,116 - MPMX19_04538 0.68 -1.7 912,116 - MPMX19_04538 0.68 +0.5 912,116 - MPMX19_04538 0.68 -1.7 912,116 - MPMX19_04538 0.68 -1.7 912,116 - MPMX19_04538 0.68 +1.0 912,116 - MPMX19_04538 0.68 +0.8 912,116 - MPMX19_04538 0.68 -0.5 912,116 - MPMX19_04538 0.68 -0.2 912,116 - MPMX19_04538 0.68 -0.5 912,116 - MPMX19_04538 0.68 -1.7 912,116 - MPMX19_04538 0.68 -1.8 912,116 - MPMX19_04538 0.68 -1.4 912,116 - MPMX19_04538 0.68 -0.1 912,116 - MPMX19_04538 0.68 -0.2 912,184 + MPMX19_04538 0.74 -2.1 912,184 + MPMX19_04538 0.74 -0.2 912,184 + MPMX19_04538 0.74 -1.8 912,184 + MPMX19_04538 0.74 +0.9 912,184 + MPMX19_04538 0.74 -0.5 912,184 + MPMX19_04538 0.74 +0.2 912,184 + MPMX19_04538 0.74 -2.4 912,184 + MPMX19_04538 0.74 -0.2 912,184 + MPMX19_04538 0.74 -1.1 912,184 + MPMX19_04538 0.74 +0.3 912,184 + MPMX19_04538 0.74 -1.5 912,184 + MPMX19_04538 0.74 +1.3 912,184 + MPMX19_04538 0.74 -0.6 912,184 + MPMX19_04538 0.74 -0.7 912,184 + MPMX19_04538 0.74 -0.7 912,185 - MPMX19_04538 0.74 -0.0 912,185 - MPMX19_04538 0.74 -1.8 912,185 - MPMX19_04538 0.74 -1.4 912,185 - MPMX19_04538 0.74 -0.6 912,185 - MPMX19_04538 0.74 -0.8 912,185 - MPMX19_04538 0.74 -0.4 912,185 - MPMX19_04538 0.74 -0.1 912,185 - MPMX19_04538 0.74 -0.5 912,185 - MPMX19_04538 0.74 +0.9 912,185 - MPMX19_04538 0.74 -1.0 912,185 - MPMX19_04538 0.74 -2.7 912,185 - MPMX19_04538 0.74 +0.1 912,185 - MPMX19_04538 0.74 +0.0 912,185 - MPMX19_04538 0.74 -2.0 912,185 - MPMX19_04538 0.74 -1.1 912,185 - MPMX19_04538 0.74 -1.2 912,185 - MPMX19_04538 0.74 +0.8 912,185 - MPMX19_04538 0.74 -2.1 912,220 + MPMX19_04538 0.78 -1.0 912,220 + MPMX19_04538 0.78 +0.0 912,265 + MPMX19_04538 0.81 +0.0 912,265 + MPMX19_04538 0.81 -1.1 912,271 + MPMX19_04538 0.82 -1.5 912,271 + MPMX19_04538 0.82 -0.1 912,271 + MPMX19_04538 0.82 -0.7 912,271 + MPMX19_04538 0.82 -1.1 912,271 + MPMX19_04538 0.82 -0.3 912,271 + MPMX19_04538 0.82 -1.1 912,272 - MPMX19_04538 0.82 -1.2 912,272 - MPMX19_04538 0.82 +1.6 912,272 - MPMX19_04538 0.82 -1.8 912,272 - MPMX19_04538 0.82 -0.7 912,272 - MPMX19_04538 0.82 -1.2 912,272 - MPMX19_04538 0.82 -0.5 912,272 - MPMX19_04538 0.82 -0.1 912,272 - MPMX19_04538 0.82 +1.0 912,272 - MPMX19_04538 0.82 -0.9 912,272 - MPMX19_04538 0.82 -1.2 912,364 + -1.7 912,364 + -1.7 912,364 + +0.0 912,365 - +0.2 912,365 - -0.9 912,424 + -0.1 912,424 + -1.2 912,424 + -1.1 912,424 + -1.4 912,424 + -1.1 912,424 + +0.3 912,425 - -0.0 912,425 - -1.4 912,425 - -0.8 912,425 - +0.0 912,425 - -0.4 912,425 - +0.8 912,425 - -1.0 912,425 - -0.2 912,425 - -0.1 912,425 - -0.2 912,425 - +0.3 912,425 - +0.3 912,425 - -0.4 912,425 - -0.2 912,439 + -2.4 912,439 + -0.2 912,439 + -0.4 912,439 + +1.3 912,439 + -0.3 912,439 + -0.2 912,440 - -0.6 912,440 - +0.5 912,472 + -1.8 912,472 + -1.1 912,472 + -1.6 912,472 + -0.7 912,473 - -1.2 912,473 - -0.8 912,559 + -0.2 912,559 + +0.0 912,559 + -0.5 912,559 + +0.0 912,559 + +0.8 912,559 + -0.8 912,559 + -1.7 912,559 + -1.0 912,559 + +1.0 912,559 + -0.4 912,559 + -1.0 912,559 + -1.1 912,559 + -2.8 912,559 + +0.5 912,559 + -0.2 912,559 + -1.0 912,559 + +0.8 912,559 + +0.5 912,559 + -1.0 912,559 + -1.7 912,559 + -0.4 912,560 - +0.0 912,560 - +0.0 912,560 - +0.5 912,560 - +0.2 912,560 - +1.0 912,560 - -0.7 912,560 - -1.0 912,560 - -1.1 912,560 - -1.2 912,560 - -1.8 912,560 - -0.7 912,560 - +0.6 912,560 - -0.7 912,560 - -1.7 912,560 - +0.5 912,560 - +0.5 912,560 - -1.5 912,560 - -0.8 912,560 - -0.5 912,560 - -0.2 912,560 - -1.1 912,560 - -0.7 912,560 - -0.2 912,560 - -1.0 912,560 - -1.4 912,560 - -3.0 912,560 - +0.5 912,577 + -1.0 912,578 - -0.2 912,578 - +0.8 912,578 - -1.0 912,642 + -0.8 912,642 + +0.3 912,642 + -0.5 913,362 + MPMX19_04539 0.88 -0.8 913,362 + MPMX19_04539 0.88 -0.8 913,363 - MPMX19_04539 0.88 -0.5 913,423 - +0.3 913,555 - MPMX19_04540 0.11 +0.5 913,714 + MPMX19_04540 0.28 -1.0 913,714 + MPMX19_04540 0.28 -0.2 913,715 - MPMX19_04540 0.28 +0.3 914,056 + MPMX19_04540 0.66 +0.0 914,056 + MPMX19_04540 0.66 -0.5 914,056 + MPMX19_04540 0.66 -0.4 914,056 + MPMX19_04540 0.66 -0.1 914,056 + MPMX19_04540 0.66 +0.5 914,056 + MPMX19_04540 0.66 -1.0 914,056 + MPMX19_04540 0.66 +0.3 914,056 + MPMX19_04540 0.66 -0.5 914,057 - MPMX19_04540 0.66 +0.0 914,057 - MPMX19_04540 0.66 -1.6 914,057 - MPMX19_04540 0.66 -0.7 914,057 - MPMX19_04540 0.66 +0.3 914,057 - MPMX19_04540 0.66 -0.1 914,057 - MPMX19_04540 0.66 -0.5 914,057 - MPMX19_04540 0.66 -0.2 914,057 - MPMX19_04540 0.66 -0.4 914,065 + MPMX19_04540 0.67 -0.2 914,065 + MPMX19_04540 0.67 -0.4 914,065 + MPMX19_04540 0.67 -1.1 914,065 + MPMX19_04540 0.67 -1.2 914,065 + MPMX19_04540 0.67 -0.1 914,066 - MPMX19_04540 0.67 -0.2 914,066 - MPMX19_04540 0.67 -0.9 914,066 - MPMX19_04540 0.67 -1.0 914,194 + MPMX19_04540 0.82 +0.0 914,194 + MPMX19_04540 0.82 +0.2 914,195 - MPMX19_04540 0.82 -1.1
Or see this region's nucleotide sequence