Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04078

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04077 and MPMX19_04078 are separated by 22 nucleotidesMPMX19_04078 and MPMX19_04079 are separated by 4 nucleotidesMPMX19_04079 and MPMX19_04080 are separated by 215 nucleotidesMPMX19_04080 and MPMX19_04081 are separated by 12 nucleotides MPMX19_04077: MPMX19_04077 - Adaptive-response sensory-kinase SasA, at 383,412 to 384,773 _04077 MPMX19_04078: MPMX19_04078 - Virulence transcriptional regulatory protein PhoP, at 384,796 to 385,455 _04078 MPMX19_04079: MPMX19_04079 - hypothetical protein, at 385,460 to 385,783 _04079 MPMX19_04080: MPMX19_04080 - hypothetical protein, at 385,999 to 386,433 _04080 MPMX19_04081: MPMX19_04081 - hypothetical protein, at 386,446 to 386,577 _04081 Position (kb) 384 385 386Strain fitness (log2 ratio) -2 -1 0 1 2at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.897 kb on + strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 383.898 kb on - strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.815 kb on + strandat 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 385.163 kb on + strand, within MPMX19_04078at 385.164 kb on - strand, within MPMX19_04078at 385.164 kb on - strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.382 kb on + strand, within MPMX19_04078at 385.382 kb on + strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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383,897 + MPMX19_04077 0.36 +0.4
383,897 + MPMX19_04077 0.36 +0.4
383,897 + MPMX19_04077 0.36 +1.4
383,897 + MPMX19_04077 0.36 +1.4
383,897 + MPMX19_04077 0.36 +1.8
383,897 + MPMX19_04077 0.36 +0.4
383,897 + MPMX19_04077 0.36 -0.3
383,897 + MPMX19_04077 0.36 +0.0
383,897 + MPMX19_04077 0.36 -2.0
383,897 + MPMX19_04077 0.36 -1.2
383,897 + MPMX19_04077 0.36 -1.6
383,897 + MPMX19_04077 0.36 -1.6
383,897 + MPMX19_04077 0.36 -0.6
383,897 + MPMX19_04077 0.36 -0.1
383,898 - MPMX19_04077 0.36 -0.2
383,898 - MPMX19_04077 0.36 -0.7
383,898 - MPMX19_04077 0.36 -1.8
383,898 - MPMX19_04077 0.36 -0.8
383,898 - MPMX19_04077 0.36 -1.0
384,523 + MPMX19_04077 0.82 +0.2
384,523 + MPMX19_04077 0.82 -0.5
384,523 + MPMX19_04077 0.82 -1.2
384,524 - MPMX19_04077 0.82 -0.2
384,524 - MPMX19_04077 0.82 -1.0
384,524 - MPMX19_04077 0.82 -0.2
384,524 - MPMX19_04077 0.82 -0.5
384,815 + -0.2
384,920 + MPMX19_04078 0.19 +0.3
384,920 + MPMX19_04078 0.19 -1.0
384,920 + MPMX19_04078 0.19 -0.7
384,920 + MPMX19_04078 0.19 -1.2
384,920 + MPMX19_04078 0.19 +0.5
384,920 + MPMX19_04078 0.19 -1.5
384,920 + MPMX19_04078 0.19 -0.1
384,920 + MPMX19_04078 0.19 -0.6
384,920 + MPMX19_04078 0.19 -1.1
384,921 - MPMX19_04078 0.19 -2.0
384,921 - MPMX19_04078 0.19 +0.9
384,921 - MPMX19_04078 0.19 +1.0
384,921 - MPMX19_04078 0.19 -0.2
384,921 - MPMX19_04078 0.19 +0.2
384,921 - MPMX19_04078 0.19 -1.9
384,921 - MPMX19_04078 0.19 -1.6
384,977 + MPMX19_04078 0.27 -0.5
384,977 + MPMX19_04078 0.27 -0.3
384,977 + MPMX19_04078 0.27 -0.8
384,977 + MPMX19_04078 0.27 +0.8
384,977 + MPMX19_04078 0.27 -1.2
384,978 - MPMX19_04078 0.28 -1.5
384,978 - MPMX19_04078 0.28 -0.9
384,978 - MPMX19_04078 0.28 +0.0
384,978 - MPMX19_04078 0.28 -1.9
384,978 - MPMX19_04078 0.28 +0.3
384,978 - MPMX19_04078 0.28 +0.3
384,978 - MPMX19_04078 0.28 -1.1
384,978 - MPMX19_04078 0.28 -0.2
384,978 - MPMX19_04078 0.28 -2.0
385,163 + MPMX19_04078 0.56 -0.5
385,164 - MPMX19_04078 0.56 -1.3
385,164 - MPMX19_04078 0.56 -0.2
385,322 + MPMX19_04078 0.80 -0.5
385,322 + MPMX19_04078 0.80 -1.7
385,322 + MPMX19_04078 0.80 +1.0
385,323 - MPMX19_04078 0.80 -1.0
385,323 - MPMX19_04078 0.80 -0.5
385,323 - MPMX19_04078 0.80 -1.6
385,323 - MPMX19_04078 0.80 -1.7
385,323 - MPMX19_04078 0.80 -1.7
385,323 - MPMX19_04078 0.80 -0.5
385,323 - MPMX19_04078 0.80 -1.9
385,382 + MPMX19_04078 0.89 -1.7
385,382 + MPMX19_04078 0.89 -0.8
385,383 - MPMX19_04078 0.89 -0.6
385,383 - MPMX19_04078 0.89 -2.4
385,383 - MPMX19_04078 0.89 -0.1
385,383 - MPMX19_04078 0.89 +0.1
385,461 + -1.0
385,461 + +0.6
385,461 + -0.2
385,461 + -0.1
385,461 + -0.6
385,461 + -0.8
385,461 + -0.7
385,461 + +0.8
385,461 + -0.3
385,462 - -1.1
385,462 - -0.8
385,462 - -0.9
385,462 - +0.0
385,462 - -0.5
385,462 - -0.2
385,462 - -0.9
385,462 - -0.7
385,462 - +0.9
385,527 + MPMX19_04079 0.21 +0.0
385,527 + MPMX19_04079 0.21 -0.1
385,527 + MPMX19_04079 0.21 -0.4
385,527 + MPMX19_04079 0.21 -1.1
385,842 + -0.5
385,842 + -0.9
385,842 + -0.2
385,842 + -1.5
385,842 + -0.2
385,843 - -0.5
385,843 - -0.2
385,843 - -0.7
385,843 - -0.4
385,843 - +0.3
385,843 - -0.2
385,843 - +0.3

Or see this region's nucleotide sequence