Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03447

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03445 and MPMX19_03446 are separated by 1 nucleotidesMPMX19_03446 and MPMX19_03447 overlap by 4 nucleotidesMPMX19_03447 and MPMX19_03448 are separated by 26 nucleotides MPMX19_03445: MPMX19_03445 - hypothetical protein, at 841,471 to 842,538 _03445 MPMX19_03446: MPMX19_03446 - hypothetical protein, at 842,540 to 843,352 _03446 MPMX19_03447: MPMX19_03447 - hypothetical protein, at 843,349 to 844,590 _03447 MPMX19_03448: MPMX19_03448 - hypothetical protein, at 844,617 to 845,423 _03448 Position (kb) 843 844 845Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 842.375 kb on + strand, within MPMX19_03445at 842.375 kb on + strand, within MPMX19_03445at 842.376 kb on - strand, within MPMX19_03445at 842.383 kb on + strand, within MPMX19_03445at 842.384 kb on - strand, within MPMX19_03445at 842.384 kb on - strand, within MPMX19_03445at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.711 kb on + strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.712 kb on - strand, within MPMX19_03446at 842.746 kb on + strand, within MPMX19_03446at 842.747 kb on - strand, within MPMX19_03446at 842.747 kb on - strand, within MPMX19_03446at 842.981 kb on + strand, within MPMX19_03446at 842.981 kb on + strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 842.982 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.114 kb on - strand, within MPMX19_03446at 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.272 kb on + strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.273 kb on - strandat 843.376 kb on + strandat 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.478 kb on + strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.479 kb on - strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.673 kb on + strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.674 kb on - strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.823 kb on + strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.824 kb on - strand, within MPMX19_03447at 843.925 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.943 kb on + strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.944 kb on - strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.979 kb on + strand, within MPMX19_03447at 843.980 kb on - strand, within MPMX19_03447at 843.980 kb on - strand, within MPMX19_03447at 844.037 kb on - strand, within MPMX19_03447at 844.037 kb on - strand, within MPMX19_03447at 844.037 kb on - strand, within MPMX19_03447at 844.042 kb on + strand, within MPMX19_03447at 844.042 kb on + strand, within MPMX19_03447at 844.042 kb on + strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.043 kb on - strand, within MPMX19_03447at 844.045 kb on + strand, within MPMX19_03447at 844.045 kb on + strand, within MPMX19_03447at 844.045 kb on + strand, within MPMX19_03447at 844.046 kb on - strand, within MPMX19_03447at 844.046 kb on - strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.093 kb on + strand, within MPMX19_03447at 844.094 kb on - strand, within MPMX19_03447at 844.094 kb on - strand, within MPMX19_03447at 844.094 kb on - strand, within MPMX19_03447at 844.229 kb on + strand, within MPMX19_03447at 844.229 kb on + strand, within MPMX19_03447at 844.229 kb on + strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.230 kb on - strand, within MPMX19_03447at 844.316 kb on - strand, within MPMX19_03447at 844.316 kb on - strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.345 kb on + strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.346 kb on - strand, within MPMX19_03447at 844.499 kb on - strandat 844.614 kb on + strandat 844.614 kb on + strandat 844.614 kb on + strandat 844.614 kb on + strandat 844.614 kb on + strandat 844.615 kb on - strandat 844.615 kb on - strandat 844.615 kb on - strandat 844.615 kb on - strandat 844.615 kb on - strandat 844.615 kb on - strandat 844.615 kb on - strandat 844.633 kb on - strandat 844.633 kb on - strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.688 kb on + strandat 844.689 kb on - strandat 844.689 kb on - strandat 844.878 kb on + strand, within MPMX19_03448at 844.878 kb on + strand, within MPMX19_03448at 844.878 kb on + strand, within MPMX19_03448at 844.905 kb on + strand, within MPMX19_03448at 844.950 kb on + strand, within MPMX19_03448at 844.951 kb on - strand, within MPMX19_03448at 844.951 kb on - strand, within MPMX19_03448at 845.025 kb on + strand, within MPMX19_03448at 845.025 kb on + strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.026 kb on - strand, within MPMX19_03448at 845.169 kb on + strand, within MPMX19_03448at 845.169 kb on + strand, within MPMX19_03448at 845.169 kb on + strand, within MPMX19_03448at 845.170 kb on - strand, within MPMX19_03448at 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.357 kb on + strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.358 kb on - strandat 845.534 kb on + strandat 845.534 kb on + strandat 845.534 kb on + strandat 845.535 kb on - strandat 845.535 kb on - strandat 845.584 kb on + strandat 845.584 kb on + strandat 845.584 kb on + strandat 845.584 kb on + strandat 845.585 kb on - strandat 845.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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842,375 + MPMX19_03445 0.85 -0.8
842,375 + MPMX19_03445 0.85 -0.8
842,376 - MPMX19_03445 0.85 +0.3
842,383 + MPMX19_03445 0.85 -0.2
842,384 - MPMX19_03445 0.85 -0.4
842,384 - MPMX19_03445 0.85 +0.1
842,711 + MPMX19_03446 0.21 +2.4
842,711 + MPMX19_03446 0.21 -1.5
842,711 + MPMX19_03446 0.21 -0.2
842,711 + MPMX19_03446 0.21 -0.6
842,711 + MPMX19_03446 0.21 -1.9
842,711 + MPMX19_03446 0.21 -0.9
842,712 - MPMX19_03446 0.21 -0.4
842,712 - MPMX19_03446 0.21 -1.8
842,712 - MPMX19_03446 0.21 -1.1
842,712 - MPMX19_03446 0.21 -0.8
842,712 - MPMX19_03446 0.21 +0.1
842,712 - MPMX19_03446 0.21 -0.6
842,712 - MPMX19_03446 0.21 -0.9
842,746 + MPMX19_03446 0.25 -1.0
842,747 - MPMX19_03446 0.25 -1.8
842,747 - MPMX19_03446 0.25 +0.1
842,981 + MPMX19_03446 0.54 -0.2
842,981 + MPMX19_03446 0.54 -0.7
842,982 - MPMX19_03446 0.54 -0.1
842,982 - MPMX19_03446 0.54 -0.9
842,982 - MPMX19_03446 0.54 -1.2
842,982 - MPMX19_03446 0.54 +0.1
843,114 - MPMX19_03446 0.71 +1.4
843,114 - MPMX19_03446 0.71 +0.8
843,114 - MPMX19_03446 0.71 -0.8
843,272 + -0.9
843,272 + -1.8
843,272 + -0.7
843,272 + +0.1
843,272 + -1.5
843,273 - -1.0
843,273 - +0.6
843,273 - -1.0
843,273 - -0.2
843,376 + -1.2
843,478 + MPMX19_03447 0.10 -0.7
843,478 + MPMX19_03447 0.10 -0.4
843,478 + MPMX19_03447 0.10 -0.7
843,478 + MPMX19_03447 0.10 +0.5
843,478 + MPMX19_03447 0.10 -1.5
843,478 + MPMX19_03447 0.10 -1.1
843,479 - MPMX19_03447 0.10 -1.8
843,479 - MPMX19_03447 0.10 +0.8
843,479 - MPMX19_03447 0.10 -1.3
843,479 - MPMX19_03447 0.10 +0.4
843,479 - MPMX19_03447 0.10 +0.6
843,673 + MPMX19_03447 0.26 -1.4
843,673 + MPMX19_03447 0.26 +0.1
843,673 + MPMX19_03447 0.26 +0.0
843,673 + MPMX19_03447 0.26 +0.4
843,673 + MPMX19_03447 0.26 -1.0
843,673 + MPMX19_03447 0.26 -0.8
843,673 + MPMX19_03447 0.26 -0.5
843,673 + MPMX19_03447 0.26 +0.1
843,673 + MPMX19_03447 0.26 -1.0
843,673 + MPMX19_03447 0.26 -0.2
843,674 - MPMX19_03447 0.26 -0.2
843,674 - MPMX19_03447 0.26 +0.2
843,674 - MPMX19_03447 0.26 +0.2
843,674 - MPMX19_03447 0.26 -0.6
843,674 - MPMX19_03447 0.26 -1.5
843,674 - MPMX19_03447 0.26 -0.9
843,674 - MPMX19_03447 0.26 -1.4
843,674 - MPMX19_03447 0.26 +0.2
843,674 - MPMX19_03447 0.26 +0.9
843,674 - MPMX19_03447 0.26 -1.0
843,674 - MPMX19_03447 0.26 +0.1
843,823 + MPMX19_03447 0.38 +0.8
843,823 + MPMX19_03447 0.38 +0.8
843,823 + MPMX19_03447 0.38 -0.6
843,823 + MPMX19_03447 0.38 +0.2
843,823 + MPMX19_03447 0.38 -0.7
843,823 + MPMX19_03447 0.38 -1.0
843,824 - MPMX19_03447 0.38 -0.1
843,824 - MPMX19_03447 0.38 -0.6
843,824 - MPMX19_03447 0.38 +0.8
843,824 - MPMX19_03447 0.38 -0.6
843,824 - MPMX19_03447 0.38 -0.8
843,925 + MPMX19_03447 0.46 -0.2
843,943 + MPMX19_03447 0.48 +0.0
843,943 + MPMX19_03447 0.48 +0.2
843,943 + MPMX19_03447 0.48 -1.2
843,943 + MPMX19_03447 0.48 +0.1
843,943 + MPMX19_03447 0.48 +0.1
843,943 + MPMX19_03447 0.48 -0.0
843,943 + MPMX19_03447 0.48 -0.0
843,943 + MPMX19_03447 0.48 -0.9
843,943 + MPMX19_03447 0.48 -1.5
843,943 + MPMX19_03447 0.48 +0.2
843,943 + MPMX19_03447 0.48 -1.7
843,944 - MPMX19_03447 0.48 +0.7
843,944 - MPMX19_03447 0.48 -0.2
843,944 - MPMX19_03447 0.48 +0.4
843,944 - MPMX19_03447 0.48 +0.1
843,944 - MPMX19_03447 0.48 +0.7
843,944 - MPMX19_03447 0.48 -0.4
843,944 - MPMX19_03447 0.48 -0.4
843,944 - MPMX19_03447 0.48 -2.2
843,944 - MPMX19_03447 0.48 -1.4
843,944 - MPMX19_03447 0.48 +0.1
843,944 - MPMX19_03447 0.48 -1.0
843,979 + MPMX19_03447 0.51 +0.4
843,979 + MPMX19_03447 0.51 +0.8
843,979 + MPMX19_03447 0.51 -0.9
843,979 + MPMX19_03447 0.51 -0.6
843,979 + MPMX19_03447 0.51 -0.0
843,980 - MPMX19_03447 0.51 -1.0
843,980 - MPMX19_03447 0.51 -1.2
844,037 - MPMX19_03447 0.55 -2.7
844,037 - MPMX19_03447 0.55 -0.5
844,037 - MPMX19_03447 0.55 +0.8
844,042 + MPMX19_03447 0.56 +0.9
844,042 + MPMX19_03447 0.56 +0.2
844,042 + MPMX19_03447 0.56 -0.5
844,043 - MPMX19_03447 0.56 -0.8
844,043 - MPMX19_03447 0.56 +0.8
844,043 - MPMX19_03447 0.56 -0.6
844,043 - MPMX19_03447 0.56 +0.0
844,043 - MPMX19_03447 0.56 -1.5
844,043 - MPMX19_03447 0.56 -1.1
844,043 - MPMX19_03447 0.56 -0.6
844,043 - MPMX19_03447 0.56 -0.8
844,043 - MPMX19_03447 0.56 -0.4
844,043 - MPMX19_03447 0.56 +0.2
844,045 + MPMX19_03447 0.56 +0.0
844,045 + MPMX19_03447 0.56 -0.8
844,045 + MPMX19_03447 0.56 +0.4
844,046 - MPMX19_03447 0.56 +0.4
844,046 - MPMX19_03447 0.56 -0.9
844,093 + MPMX19_03447 0.60 +0.4
844,093 + MPMX19_03447 0.60 -2.0
844,093 + MPMX19_03447 0.60 -0.5
844,093 + MPMX19_03447 0.60 +0.5
844,093 + MPMX19_03447 0.60 -0.9
844,093 + MPMX19_03447 0.60 +0.4
844,094 - MPMX19_03447 0.60 -0.4
844,094 - MPMX19_03447 0.60 -0.8
844,094 - MPMX19_03447 0.60 -0.6
844,229 + MPMX19_03447 0.71 +0.4
844,229 + MPMX19_03447 0.71 +0.8
844,229 + MPMX19_03447 0.71 -0.8
844,230 - MPMX19_03447 0.71 -1.4
844,230 - MPMX19_03447 0.71 -0.6
844,230 - MPMX19_03447 0.71 +1.2
844,230 - MPMX19_03447 0.71 -0.2
844,230 - MPMX19_03447 0.71 +0.4
844,316 - MPMX19_03447 0.78 +0.8
844,316 - MPMX19_03447 0.78 -0.9
844,345 + MPMX19_03447 0.80 -0.8
844,345 + MPMX19_03447 0.80 -1.4
844,345 + MPMX19_03447 0.80 +0.2
844,345 + MPMX19_03447 0.80 -0.4
844,345 + MPMX19_03447 0.80 +0.3
844,345 + MPMX19_03447 0.80 -0.2
844,345 + MPMX19_03447 0.80 -1.9
844,345 + MPMX19_03447 0.80 -0.0
844,346 - MPMX19_03447 0.80 -1.3
844,346 - MPMX19_03447 0.80 -0.8
844,346 - MPMX19_03447 0.80 -0.3
844,346 - MPMX19_03447 0.80 -0.6
844,346 - MPMX19_03447 0.80 +1.8
844,346 - MPMX19_03447 0.80 +0.4
844,346 - MPMX19_03447 0.80 -0.8
844,346 - MPMX19_03447 0.80 +0.3
844,499 - -1.5
844,614 + +0.8
844,614 + +0.2
844,614 + -0.8
844,614 + -0.2
844,614 + -0.4
844,615 - +0.2
844,615 - +1.4
844,615 - -0.4
844,615 - +0.4
844,615 - -0.2
844,615 - -1.3
844,615 - -1.4
844,633 - -0.8
844,633 - +0.4
844,688 + +0.1
844,688 + -0.6
844,688 + -0.8
844,688 + -0.3
844,688 + +0.8
844,689 - -0.5
844,689 - +1.1
844,878 + MPMX19_03448 0.32 +1.8
844,878 + MPMX19_03448 0.32 -0.2
844,878 + MPMX19_03448 0.32 +0.8
844,905 + MPMX19_03448 0.36 +0.1
844,950 + MPMX19_03448 0.41 -0.2
844,951 - MPMX19_03448 0.41 -0.7
844,951 - MPMX19_03448 0.41 +1.1
845,025 + MPMX19_03448 0.51 +0.0
845,025 + MPMX19_03448 0.51 -0.3
845,026 - MPMX19_03448 0.51 +1.1
845,026 - MPMX19_03448 0.51 +0.6
845,026 - MPMX19_03448 0.51 +0.4
845,026 - MPMX19_03448 0.51 -0.6
845,026 - MPMX19_03448 0.51 +0.2
845,169 + MPMX19_03448 0.68 -1.9
845,169 + MPMX19_03448 0.68 -1.4
845,169 + MPMX19_03448 0.68 -1.4
845,170 - MPMX19_03448 0.69 -1.0
845,357 + -1.3
845,357 + -1.0
845,357 + -0.7
845,357 + -0.8
845,357 + +0.3
845,357 + -0.1
845,357 + -1.0
845,357 + +0.4
845,358 - -1.4
845,358 - -3.1
845,358 - -0.2
845,358 - +0.8
845,358 - +1.4
845,534 + -1.4
845,534 + -1.2
845,534 + -2.0
845,535 - -0.4
845,535 - +0.2
845,584 + -1.5
845,584 + -1.2
845,584 + -0.7
845,584 + -0.4
845,585 - -1.7
845,585 - +0.6

Or see this region's nucleotide sequence