Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03383

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03382 and MPMX19_03383 are separated by 5 nucleotidesMPMX19_03383 and MPMX19_03384 are separated by 89 nucleotides MPMX19_03382: MPMX19_03382 - Biotin carboxylase, at 766,511 to 767,890 _03382 MPMX19_03383: MPMX19_03383 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 767,896 to 768,132 _03383 MPMX19_03384: MPMX19_03384 - 5-oxoprolinase subunit A, at 768,222 to 769,007 _03384 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1 2 3at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.034 kb on + strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.035 kb on - strand, within MPMX19_03382at 767.058 kb on + strand, within MPMX19_03382at 767.059 kb on - strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.064 kb on + strand, within MPMX19_03382at 767.065 kb on - strand, within MPMX19_03382at 767.150 kb on + strand, within MPMX19_03382at 767.151 kb on - strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.296 kb on - strand, within MPMX19_03382at 767.296 kb on - strand, within MPMX19_03382at 767.709 kb on + strand, within MPMX19_03382at 767.709 kb on + strand, within MPMX19_03382at 767.709 kb on + strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.810 kb on + strandat 767.811 kb on - strandat 767.811 kb on - strandat 767.811 kb on - strandat 768.095 kb on + strand, within MPMX19_03383at 768.095 kb on + strand, within MPMX19_03383at 768.095 kb on + strand, within MPMX19_03383at 768.205 kb on + strandat 768.205 kb on + strandat 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.499 kb on + strand, within MPMX19_03384at 768.500 kb on - strand, within MPMX19_03384at 768.500 kb on - strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.728 kb on - strand, within MPMX19_03384at 768.998 kb on + strandat 768.998 kb on + strandat 768.998 kb on + strandat 768.999 kb on - strandat 768.999 kb on - strandat 769.013 kb on + strandat 769.013 kb on + strandat 769.013 kb on + strandat 769.014 kb on - strandat 769.014 kb on - strandat 769.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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767,034 + MPMX19_03382 0.38 +0.3
767,034 + MPMX19_03382 0.38 -0.4
767,034 + MPMX19_03382 0.38 +0.7
767,034 + MPMX19_03382 0.38 +1.7
767,034 + MPMX19_03382 0.38 -0.4
767,034 + MPMX19_03382 0.38 -0.4
767,034 + MPMX19_03382 0.38 +0.1
767,034 + MPMX19_03382 0.38 -0.5
767,035 - MPMX19_03382 0.38 -0.4
767,035 - MPMX19_03382 0.38 -0.9
767,035 - MPMX19_03382 0.38 +0.4
767,035 - MPMX19_03382 0.38 -1.3
767,035 - MPMX19_03382 0.38 +0.1
767,035 - MPMX19_03382 0.38 -1.0
767,035 - MPMX19_03382 0.38 -0.1
767,035 - MPMX19_03382 0.38 -1.1
767,035 - MPMX19_03382 0.38 -1.3
767,035 - MPMX19_03382 0.38 -0.1
767,035 - MPMX19_03382 0.38 -2.5
767,035 - MPMX19_03382 0.38 +1.4
767,035 - MPMX19_03382 0.38 -1.1
767,035 - MPMX19_03382 0.38 -1.3
767,035 - MPMX19_03382 0.38 -1.1
767,058 + MPMX19_03382 0.40 -0.3
767,059 - MPMX19_03382 0.40 -1.3
767,064 + MPMX19_03382 0.40 +0.4
767,064 + MPMX19_03382 0.40 -0.4
767,064 + MPMX19_03382 0.40 -1.5
767,064 + MPMX19_03382 0.40 -1.5
767,064 + MPMX19_03382 0.40 +1.1
767,064 + MPMX19_03382 0.40 -0.2
767,064 + MPMX19_03382 0.40 -1.9
767,064 + MPMX19_03382 0.40 +0.2
767,064 + MPMX19_03382 0.40 -0.6
767,064 + MPMX19_03382 0.40 -0.6
767,064 + MPMX19_03382 0.40 -1.5
767,064 + MPMX19_03382 0.40 -0.5
767,064 + MPMX19_03382 0.40 -2.1
767,065 - MPMX19_03382 0.40 +0.8
767,150 + MPMX19_03382 0.46 +2.0
767,151 - MPMX19_03382 0.46 +0.1
767,295 + MPMX19_03382 0.57 -1.6
767,295 + MPMX19_03382 0.57 -0.4
767,295 + MPMX19_03382 0.57 -0.7
767,296 - MPMX19_03382 0.57 -0.7
767,296 - MPMX19_03382 0.57 -0.6
767,709 + MPMX19_03382 0.87 +0.5
767,709 + MPMX19_03382 0.87 +0.8
767,709 + MPMX19_03382 0.87 -1.2
767,710 - MPMX19_03382 0.87 -1.1
767,710 - MPMX19_03382 0.87 -1.1
767,710 - MPMX19_03382 0.87 +1.1
767,710 - MPMX19_03382 0.87 -0.2
767,710 - MPMX19_03382 0.87 -2.5
767,793 + -0.4
767,793 + -0.6
767,793 + +1.4
767,793 + +0.6
767,793 + -0.8
767,793 + -0.8
767,794 - -0.6
767,794 - -0.9
767,794 - -2.2
767,794 - -1.1
767,794 - -1.8
767,810 + +0.9
767,811 - -1.5
767,811 - +0.1
767,811 - +0.5
768,095 + MPMX19_03383 0.84 -0.8
768,095 + MPMX19_03383 0.84 -1.2
768,095 + MPMX19_03383 0.84 -1.9
768,205 + -0.6
768,205 + +0.8
768,484 + MPMX19_03384 0.33 -1.7
768,484 + MPMX19_03384 0.33 -1.2
768,484 + MPMX19_03384 0.33 -0.7
768,484 + MPMX19_03384 0.33 -0.2
768,484 + MPMX19_03384 0.33 -0.7
768,484 + MPMX19_03384 0.33 -1.2
768,485 - MPMX19_03384 0.33 +0.4
768,485 - MPMX19_03384 0.33 -1.8
768,485 - MPMX19_03384 0.33 -2.1
768,499 + MPMX19_03384 0.35 +0.1
768,500 - MPMX19_03384 0.35 -0.9
768,500 - MPMX19_03384 0.35 -0.2
768,555 + MPMX19_03384 0.42 -0.2
768,555 + MPMX19_03384 0.42 +0.2
768,555 + MPMX19_03384 0.42 +0.6
768,555 + MPMX19_03384 0.42 -0.9
768,555 + MPMX19_03384 0.42 -0.8
768,556 - MPMX19_03384 0.42 -1.9
768,556 - MPMX19_03384 0.42 -0.4
768,556 - MPMX19_03384 0.42 +0.3
768,647 + MPMX19_03384 0.54 -0.2
768,647 + MPMX19_03384 0.54 +1.4
768,647 + MPMX19_03384 0.54 -0.9
768,648 - MPMX19_03384 0.54 -0.3
768,648 - MPMX19_03384 0.54 -0.1
768,648 - MPMX19_03384 0.54 -0.3
768,648 - MPMX19_03384 0.54 -0.5
768,649 + MPMX19_03384 0.54 -0.2
768,649 + MPMX19_03384 0.54 -1.7
768,649 + MPMX19_03384 0.54 +0.8
768,649 + MPMX19_03384 0.54 -1.8
768,649 + MPMX19_03384 0.54 -0.8
768,649 + MPMX19_03384 0.54 -0.9
768,649 + MPMX19_03384 0.54 -1.5
768,649 + MPMX19_03384 0.54 -1.6
768,649 + MPMX19_03384 0.54 -0.8
768,649 + MPMX19_03384 0.54 -0.6
768,649 + MPMX19_03384 0.54 +1.1
768,649 + MPMX19_03384 0.54 -1.1
768,649 + MPMX19_03384 0.54 -0.4
768,649 + MPMX19_03384 0.54 -0.2
768,649 + MPMX19_03384 0.54 -1.3
768,649 + MPMX19_03384 0.54 +0.7
768,649 + MPMX19_03384 0.54 -0.6
768,650 - MPMX19_03384 0.54 -0.9
768,650 - MPMX19_03384 0.54 -0.2
768,650 - MPMX19_03384 0.54 +3.0
768,650 - MPMX19_03384 0.54 -1.1
768,650 - MPMX19_03384 0.54 +0.2
768,650 - MPMX19_03384 0.54 +1.1
768,650 - MPMX19_03384 0.54 -1.4
768,650 - MPMX19_03384 0.54 +1.4
768,650 - MPMX19_03384 0.54 -0.3
768,727 + MPMX19_03384 0.64 -0.2
768,727 + MPMX19_03384 0.64 -0.9
768,727 + MPMX19_03384 0.64 -0.6
768,728 - MPMX19_03384 0.64 -0.3
768,998 + -2.0
768,998 + +0.1
768,998 + -1.9
768,999 - -0.4
768,999 - -0.2
769,013 + -0.4
769,013 + -1.9
769,013 + -0.6
769,014 - -1.8
769,014 - -1.1
769,014 - -0.2

Or see this region's nucleotide sequence