Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03091

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03090 and MPMX19_03091 are separated by 33 nucleotidesMPMX19_03091 and MPMX19_03092 overlap by 4 nucleotidesMPMX19_03092 and MPMX19_03093 overlap by 4 nucleotides MPMX19_03090: MPMX19_03090 - Macrolide export ATP-binding/permease protein MacB, at 361,250 to 363,181 _03090 MPMX19_03091: MPMX19_03091 - hypothetical protein, at 363,215 to 364,087 _03091 MPMX19_03092: MPMX19_03092 - High-affinity zinc uptake system membrane protein ZnuB, at 364,084 to 364,974 _03092 MPMX19_03093: MPMX19_03093 - Manganese import ATP-binding protein ScaC, at 364,971 to 365,711 _03093 Position (kb) 363 364 365Strain fitness (log2 ratio) -2 -1 0 1 2at 362.288 kb on + strand, within MPMX19_03090at 362.289 kb on - strand, within MPMX19_03090at 363.179 kb on + strandat 363.180 kb on - strandat 363.180 kb on - strandat 363.399 kb on + strand, within MPMX19_03091at 363.399 kb on + strand, within MPMX19_03091at 363.399 kb on + strand, within MPMX19_03091at 363.400 kb on - strand, within MPMX19_03091at 363.801 kb on + strand, within MPMX19_03091at 364.382 kb on + strand, within MPMX19_03092at 364.383 kb on - strand, within MPMX19_03092at 364.383 kb on - strand, within MPMX19_03092at 364.383 kb on - strand, within MPMX19_03092at 364.679 kb on + strand, within MPMX19_03092at 364.679 kb on + strand, within MPMX19_03092at 364.679 kb on + strand, within MPMX19_03092at 364.680 kb on - strand, within MPMX19_03092at 364.680 kb on - strand, within MPMX19_03092at 364.727 kb on + strand, within MPMX19_03092at 364.727 kb on + strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.728 kb on - strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.739 kb on + strand, within MPMX19_03092at 364.740 kb on - strand, within MPMX19_03092at 364.740 kb on - strand, within MPMX19_03092

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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362,288 + MPMX19_03090 0.54 -1.5
362,289 - MPMX19_03090 0.54 +0.1
363,179 + -0.4
363,180 - -0.4
363,180 - -1.2
363,399 + MPMX19_03091 0.21 +0.2
363,399 + MPMX19_03091 0.21 -0.4
363,399 + MPMX19_03091 0.21 -1.5
363,400 - MPMX19_03091 0.21 +0.1
363,801 + MPMX19_03091 0.67 +0.5
364,382 + MPMX19_03092 0.33 -0.4
364,383 - MPMX19_03092 0.34 +2.0
364,383 - MPMX19_03092 0.34 -2.2
364,383 - MPMX19_03092 0.34 -0.1
364,679 + MPMX19_03092 0.67 -0.6
364,679 + MPMX19_03092 0.67 -0.1
364,679 + MPMX19_03092 0.67 +0.5
364,680 - MPMX19_03092 0.67 +1.2
364,680 - MPMX19_03092 0.67 -0.4
364,727 + MPMX19_03092 0.72 -0.6
364,727 + MPMX19_03092 0.72 -0.9
364,728 - MPMX19_03092 0.72 -0.5
364,728 - MPMX19_03092 0.72 -2.4
364,728 - MPMX19_03092 0.72 +0.3
364,728 - MPMX19_03092 0.72 -1.1
364,739 + MPMX19_03092 0.74 -0.0
364,739 + MPMX19_03092 0.74 -0.5
364,739 + MPMX19_03092 0.74 -1.5
364,740 - MPMX19_03092 0.74 -1.8
364,740 - MPMX19_03092 0.74 -1.2

Or see this region's nucleotide sequence