Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03003

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03001 and MPMX19_03002 are separated by 108 nucleotidesMPMX19_03002 and MPMX19_03003 overlap by 8 nucleotidesMPMX19_03003 and MPMX19_03004 overlap by 4 nucleotides MPMX19_03001: MPMX19_03001 - Ribulokinase, at 263,305 to 264,834 _03001 MPMX19_03002: MPMX19_03002 - hypothetical protein, at 264,943 to 265,278 _03002 MPMX19_03003: MPMX19_03003 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 265,271 to 266,587 _03003 MPMX19_03004: MPMX19_03004 - 2-oxoisovalerate dehydrogenase subunit beta, at 266,584 to 267,579 _03004 Position (kb) 265 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 264.287 kb on + strand, within MPMX19_03001at 264.288 kb on - strand, within MPMX19_03001at 264.288 kb on - strand, within MPMX19_03001at 264.363 kb on - strand, within MPMX19_03001at 264.740 kb on + strandat 264.741 kb on - strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.782 kb on + strandat 264.783 kb on - strandat 264.783 kb on - strandat 264.783 kb on - strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.827 kb on + strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.828 kb on - strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.830 kb on + strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.831 kb on - strandat 264.867 kb on - strandat 264.867 kb on - strandat 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.983 kb on + strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 264.984 kb on - strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.082 kb on + strand, within MPMX19_03002at 265.083 kb on - strand, within MPMX19_03002at 265.083 kb on - strand, within MPMX19_03002at 266.004 kb on + strand, within MPMX19_03003at 266.004 kb on + strand, within MPMX19_03003at 266.004 kb on + strand, within MPMX19_03003at 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.572 kb on + strandat 266.573 kb on - strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.576 kb on + strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.577 kb on - strandat 266.930 kb on + strand, within MPMX19_03004at 266.930 kb on + strand, within MPMX19_03004at 266.930 kb on + strand, within MPMX19_03004at 266.931 kb on - strand, within MPMX19_03004at 266.948 kb on + strand, within MPMX19_03004at 266.949 kb on - strand, within MPMX19_03004at 267.044 kb on + strand, within MPMX19_03004at 267.045 kb on - strand, within MPMX19_03004at 267.045 kb on - strand, within MPMX19_03004at 267.110 kb on + strand, within MPMX19_03004at 267.110 kb on + strand, within MPMX19_03004at 267.111 kb on - strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.167 kb on + strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.168 kb on - strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.266 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.326 kb on + strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.327 kb on - strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.461 kb on + strand, within MPMX19_03004at 267.462 kb on - strand, within MPMX19_03004at 267.474 kb on - strand, within MPMX19_03004at 267.557 kb on + strandat 267.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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264,287 + MPMX19_03001 0.64 +0.5
264,288 - MPMX19_03001 0.64 -1.3
264,288 - MPMX19_03001 0.64 -0.7
264,363 - MPMX19_03001 0.69 -2.0
264,740 + -0.0
264,741 - -0.4
264,782 + -1.4
264,782 + -1.3
264,782 + -0.1
264,782 + -1.8
264,782 + -0.6
264,783 - -0.0
264,783 - -0.9
264,783 - -1.2
264,827 + +0.1
264,827 + -2.0
264,827 + +0.1
264,827 + -1.8
264,827 + +0.1
264,827 + -3.5
264,828 - -0.7
264,828 - -0.4
264,828 - -0.6
264,828 - +0.2
264,828 - +0.7
264,828 - -0.4
264,828 - -1.7
264,828 - -0.0
264,828 - -1.1
264,828 - -0.7
264,828 - -0.6
264,830 + -0.0
264,830 + -2.2
264,830 + +0.3
264,830 + -0.9
264,830 + -1.3
264,830 + +0.4
264,830 + -0.8
264,830 + -1.7
264,830 + +0.8
264,830 + -1.2
264,830 + -0.8
264,830 + -1.2
264,830 + -1.4
264,831 - -0.9
264,831 - +0.1
264,831 - +2.0
264,831 - -0.2
264,831 - +1.0
264,831 - +0.3
264,831 - +1.4
264,831 - -1.1
264,831 - -0.0
264,831 - -0.0
264,867 - -1.7
264,867 - +0.8
264,983 + MPMX19_03002 0.12 -1.5
264,983 + MPMX19_03002 0.12 -1.2
264,983 + MPMX19_03002 0.12 -0.0
264,983 + MPMX19_03002 0.12 -0.9
264,983 + MPMX19_03002 0.12 -0.0
264,983 + MPMX19_03002 0.12 +0.1
264,983 + MPMX19_03002 0.12 -0.3
264,983 + MPMX19_03002 0.12 -2.0
264,983 + MPMX19_03002 0.12 -0.7
264,984 - MPMX19_03002 0.12 -0.7
264,984 - MPMX19_03002 0.12 -1.1
264,984 - MPMX19_03002 0.12 -0.7
264,984 - MPMX19_03002 0.12 -0.2
264,984 - MPMX19_03002 0.12 +0.4
264,984 - MPMX19_03002 0.12 -1.5
264,984 - MPMX19_03002 0.12 +0.1
264,984 - MPMX19_03002 0.12 -0.7
264,984 - MPMX19_03002 0.12 -0.1
264,984 - MPMX19_03002 0.12 +0.1
264,984 - MPMX19_03002 0.12 +1.1
264,984 - MPMX19_03002 0.12 -0.6
264,984 - MPMX19_03002 0.12 -1.3
264,984 - MPMX19_03002 0.12 -1.6
264,984 - MPMX19_03002 0.12 +0.1
264,984 - MPMX19_03002 0.12 +0.8
264,984 - MPMX19_03002 0.12 -0.9
264,984 - MPMX19_03002 0.12 -0.9
265,082 + MPMX19_03002 0.41 +0.1
265,082 + MPMX19_03002 0.41 -1.0
265,082 + MPMX19_03002 0.41 -0.7
265,082 + MPMX19_03002 0.41 -1.6
265,083 - MPMX19_03002 0.42 +0.4
265,083 - MPMX19_03002 0.42 -1.2
266,004 + MPMX19_03003 0.56 -1.3
266,004 + MPMX19_03003 0.56 -0.7
266,004 + MPMX19_03003 0.56 -1.3
266,572 + +0.6
266,572 + -0.4
266,572 + -0.5
266,572 + -1.8
266,572 + -0.5
266,572 + +0.3
266,572 + +2.0
266,573 - -0.5
266,576 + -0.0
266,576 + -0.1
266,576 + -1.9
266,576 + -2.0
266,576 + +1.0
266,576 + -0.4
266,576 + -1.3
266,576 + -0.9
266,576 + -1.5
266,576 + -1.3
266,576 + -1.2
266,576 + -1.3
266,576 + -1.1
266,576 + +0.1
266,576 + -1.0
266,577 - -0.7
266,577 - -1.6
266,577 - -0.7
266,577 - -0.5
266,577 - +0.9
266,577 - -0.7
266,577 - -1.0
266,577 - -2.2
266,577 - -1.1
266,577 - -0.3
266,930 + MPMX19_03004 0.35 +0.3
266,930 + MPMX19_03004 0.35 +0.4
266,930 + MPMX19_03004 0.35 -2.0
266,931 - MPMX19_03004 0.35 -0.5
266,948 + MPMX19_03004 0.37 -0.0
266,949 - MPMX19_03004 0.37 +0.6
267,044 + MPMX19_03004 0.46 -0.7
267,045 - MPMX19_03004 0.46 +0.0
267,045 - MPMX19_03004 0.46 -2.0
267,110 + MPMX19_03004 0.53 -0.9
267,110 + MPMX19_03004 0.53 +0.9
267,111 - MPMX19_03004 0.53 -0.3
267,167 + MPMX19_03004 0.59 -0.3
267,167 + MPMX19_03004 0.59 -0.7
267,167 + MPMX19_03004 0.59 +0.9
267,167 + MPMX19_03004 0.59 +0.1
267,168 - MPMX19_03004 0.59 -0.0
267,168 - MPMX19_03004 0.59 -1.1
267,168 - MPMX19_03004 0.59 -0.9
267,266 + MPMX19_03004 0.68 -0.1
267,266 + MPMX19_03004 0.68 +0.6
267,266 + MPMX19_03004 0.68 -0.7
267,326 + MPMX19_03004 0.74 +0.3
267,326 + MPMX19_03004 0.74 -0.8
267,326 + MPMX19_03004 0.74 -0.1
267,326 + MPMX19_03004 0.74 -0.7
267,326 + MPMX19_03004 0.74 -0.1
267,326 + MPMX19_03004 0.74 -0.5
267,326 + MPMX19_03004 0.74 -0.9
267,326 + MPMX19_03004 0.74 +0.6
267,326 + MPMX19_03004 0.74 +0.9
267,326 + MPMX19_03004 0.74 -1.5
267,326 + MPMX19_03004 0.74 -1.8
267,326 + MPMX19_03004 0.74 -1.2
267,326 + MPMX19_03004 0.74 -0.7
267,326 + MPMX19_03004 0.74 +0.9
267,326 + MPMX19_03004 0.74 -1.7
267,326 + MPMX19_03004 0.74 +0.1
267,326 + MPMX19_03004 0.74 -3.0
267,326 + MPMX19_03004 0.74 -1.0
267,326 + MPMX19_03004 0.74 -0.6
267,327 - MPMX19_03004 0.75 -0.4
267,327 - MPMX19_03004 0.75 -1.1
267,327 - MPMX19_03004 0.75 -2.0
267,461 + MPMX19_03004 0.88 -0.6
267,461 + MPMX19_03004 0.88 -0.3
267,461 + MPMX19_03004 0.88 -0.7
267,462 - MPMX19_03004 0.88 -0.0
267,474 - MPMX19_03004 0.89 -2.0
267,557 + -1.3
267,558 - -1.5

Or see this region's nucleotide sequence