Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02998

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02997 and MPMX19_02998 overlap by 4 nucleotidesMPMX19_02998 and MPMX19_02999 are separated by 100 nucleotidesMPMX19_02999 and MPMX19_03000 are separated by 14 nucleotides MPMX19_02997: MPMX19_02997 - Multidrug export protein EmrB, at 258,963 to 260,543 _02997 MPMX19_02998: MPMX19_02998 - Colistin resistance protein EmrA, at 260,540 to 261,694 _02998 MPMX19_02999: MPMX19_02999 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 261,795 to 262,547 _02999 MPMX19_03000: MPMX19_03000 - Galactitol 2-dehydrogenase, at 262,562 to 263,308 _03000 Position (kb) 260 261 262Strain fitness (log2 ratio) -2 -1 0 1at 259.597 kb on + strand, within MPMX19_02997at 259.633 kb on + strand, within MPMX19_02997at 259.634 kb on - strand, within MPMX19_02997at 259.634 kb on - strand, within MPMX19_02997at 259.849 kb on + strand, within MPMX19_02997at 259.850 kb on - strand, within MPMX19_02997at 259.876 kb on + strand, within MPMX19_02997at 259.877 kb on - strand, within MPMX19_02997at 259.877 kb on - strand, within MPMX19_02997at 260.075 kb on - strand, within MPMX19_02997at 260.089 kb on + strand, within MPMX19_02997at 260.090 kb on - strand, within MPMX19_02997at 260.090 kb on - strand, within MPMX19_02997at 260.098 kb on + strand, within MPMX19_02997at 260.098 kb on + strand, within MPMX19_02997at 260.098 kb on + strand, within MPMX19_02997at 260.098 kb on + strand, within MPMX19_02997at 260.098 kb on + strand, within MPMX19_02997at 260.099 kb on - strand, within MPMX19_02997at 260.099 kb on - strand, within MPMX19_02997at 260.099 kb on - strand, within MPMX19_02997at 260.099 kb on - strand, within MPMX19_02997at 260.099 kb on - strand, within MPMX19_02997at 260.237 kb on - strand, within MPMX19_02997at 260.329 kb on + strand, within MPMX19_02997at 260.329 kb on + strand, within MPMX19_02997at 260.330 kb on - strand, within MPMX19_02997at 260.835 kb on + strand, within MPMX19_02998at 260.835 kb on + strand, within MPMX19_02998at 260.835 kb on + strand, within MPMX19_02998at 260.836 kb on - strand, within MPMX19_02998at 260.836 kb on - strand, within MPMX19_02998at 260.836 kb on - strand, within MPMX19_02998at 260.836 kb on - strand, within MPMX19_02998at 260.836 kb on - strand, within MPMX19_02998at 260.836 kb on - strand, within MPMX19_02998at 260.901 kb on + strand, within MPMX19_02998at 260.901 kb on + strand, within MPMX19_02998at 260.901 kb on + strand, within MPMX19_02998at 260.901 kb on + strand, within MPMX19_02998at 260.902 kb on - strand, within MPMX19_02998at 260.902 kb on - strand, within MPMX19_02998at 260.902 kb on - strand, within MPMX19_02998at 260.902 kb on - strand, within MPMX19_02998at 261.352 kb on - strand, within MPMX19_02998at 261.352 kb on - strand, within MPMX19_02998at 261.474 kb on + strand, within MPMX19_02998at 261.474 kb on + strand, within MPMX19_02998at 261.474 kb on + strand, within MPMX19_02998at 261.474 kb on + strand, within MPMX19_02998at 261.474 kb on + strand, within MPMX19_02998at 261.475 kb on - strand, within MPMX19_02998at 261.475 kb on - strand, within MPMX19_02998at 261.776 kb on + strandat 261.777 kb on - strandat 261.975 kb on - strand, within MPMX19_02999at 262.084 kb on + strand, within MPMX19_02999at 262.085 kb on - strand, within MPMX19_02999at 262.085 kb on - strand, within MPMX19_02999at 262.085 kb on - strand, within MPMX19_02999at 262.085 kb on - strand, within MPMX19_02999at 262.085 kb on - strand, within MPMX19_02999at 262.575 kb on + strandat 262.576 kb on - strandat 262.576 kb on - strandat 262.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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259,597 + MPMX19_02997 0.40 -0.7
259,633 + MPMX19_02997 0.42 +1.4
259,634 - MPMX19_02997 0.42 +0.2
259,634 - MPMX19_02997 0.42 -0.2
259,849 + MPMX19_02997 0.56 +0.8
259,850 - MPMX19_02997 0.56 +0.2
259,876 + MPMX19_02997 0.58 -0.2
259,877 - MPMX19_02997 0.58 -0.9
259,877 - MPMX19_02997 0.58 -0.1
260,075 - MPMX19_02997 0.70 +0.8
260,089 + MPMX19_02997 0.71 +0.6
260,090 - MPMX19_02997 0.71 -1.2
260,090 - MPMX19_02997 0.71 -0.2
260,098 + MPMX19_02997 0.72 -1.0
260,098 + MPMX19_02997 0.72 -0.7
260,098 + MPMX19_02997 0.72 +1.1
260,098 + MPMX19_02997 0.72 -0.9
260,098 + MPMX19_02997 0.72 -0.2
260,099 - MPMX19_02997 0.72 +0.8
260,099 - MPMX19_02997 0.72 +0.6
260,099 - MPMX19_02997 0.72 -1.8
260,099 - MPMX19_02997 0.72 -1.1
260,099 - MPMX19_02997 0.72 -0.6
260,237 - MPMX19_02997 0.81 +1.0
260,329 + MPMX19_02997 0.86 -1.9
260,329 + MPMX19_02997 0.86 -1.4
260,330 - MPMX19_02997 0.86 -0.7
260,835 + MPMX19_02998 0.26 +0.3
260,835 + MPMX19_02998 0.26 +1.2
260,835 + MPMX19_02998 0.26 -0.2
260,836 - MPMX19_02998 0.26 -0.0
260,836 - MPMX19_02998 0.26 -2.4
260,836 - MPMX19_02998 0.26 +0.7
260,836 - MPMX19_02998 0.26 +0.6
260,836 - MPMX19_02998 0.26 -0.5
260,836 - MPMX19_02998 0.26 -1.3
260,901 + MPMX19_02998 0.31 -1.2
260,901 + MPMX19_02998 0.31 +1.4
260,901 + MPMX19_02998 0.31 -1.0
260,901 + MPMX19_02998 0.31 -0.3
260,902 - MPMX19_02998 0.31 +0.7
260,902 - MPMX19_02998 0.31 -0.7
260,902 - MPMX19_02998 0.31 -0.0
260,902 - MPMX19_02998 0.31 -1.3
261,352 - MPMX19_02998 0.70 +0.3
261,352 - MPMX19_02998 0.70 -0.7
261,474 + MPMX19_02998 0.81 -0.3
261,474 + MPMX19_02998 0.81 -1.5
261,474 + MPMX19_02998 0.81 -1.0
261,474 + MPMX19_02998 0.81 -0.7
261,474 + MPMX19_02998 0.81 -0.2
261,475 - MPMX19_02998 0.81 +0.7
261,475 - MPMX19_02998 0.81 +0.7
261,776 + -0.4
261,777 - +0.1
261,975 - MPMX19_02999 0.24 -0.9
262,084 + MPMX19_02999 0.38 -0.0
262,085 - MPMX19_02999 0.39 -0.6
262,085 - MPMX19_02999 0.39 -0.9
262,085 - MPMX19_02999 0.39 +0.1
262,085 - MPMX19_02999 0.39 -0.6
262,085 - MPMX19_02999 0.39 -0.7
262,575 + -0.9
262,576 - -1.7
262,576 - -1.7
262,576 - -1.2

Or see this region's nucleotide sequence